Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04027 ATGTCGGGTTCTAGAAAATCTAGAGCTAGACAAAGGTCTAACCCTTTGAAAGAATCCAAATTGATGACAAGGAAATTGCAGCTTGTTTTTGATGATCCTGATGCCACTGATGTATCTGAAGATGAGTCACAACAACTAAGAACCACAACAAAAAGAAGCTTCTTTGAGGTCACTCTCCCTCCTCGTGTACCTGCAGCAGTTTCTTTGGCTTCTCAGAACAGCTTCTATGTGAAGCCAAAGACTGTAACAAGGAGAAAGACATGTCTTTCGGCACAACCTCAAATCAACAAGAAGGTTGTTCCAACATCAACTTCTCCAAACTCAGCGAGACGATCTTGTGCCAAATACCGCGGTGTTCGTATGAGGCCATGGGGCAAATGGGCTGCTGAGATTCGTGATCCTTTCAGAAATGTTAGAATCTGGTTGGGAACTTACAACAGTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAGGCTTCATTTTGAGCTTAAATTTCAGGCAATGGAGGCAATCAAAAAGGGTTCCGCTTCTGCAGCAGCCCCTCGACTTGCTGCATTGAAAAGAAACTCTTCTGCAGATGCTGATGCTGCTAATGCTTCTGTGTCAGAGAAATTCTCAACTACTGAAGACTCTGACAGTTTGTTCTCACACACATCACCTTCTTCCGTGCTTGAGTTGGATACCTTAGCATCCAGTTCGATTGAGAAGTTTGATGTTCCATCAAACAATAAAGCTGTTGCTGTCTACGAACCGAGTGACATGGTGGTTTGTCAACTTGAAGAGCTAGATATTCCAGATATGAGTGTTTTAAACTTGCCTGAGCCAACTGCTGCTGAGAATCCAATTGGGACTGATCCCAATCTTTGTTCTGGATTTGATTTTGATCGGTTTAACATTGACGATTTTGGACTGGATTTTGATGAATTTGGTGACTTTGATGACTTAGGTGACTTCAAGGATATTCAAATTCATGGTTTTGATGACAATGAACCTAGTGAGCTTCCTGATTTTGATTTTGGCGATATTGGTGTTGATGATGATGAATTTGCTGGTTGGATTGAGGAACCCCTCCAACACAACATACCTTGTGTCTAA 1098 0.4199 MSGSRKSRARQRSNPLKESKLMTRKLQLVFDDPDATDVSEDESQQLRTTTKRSFFEVTLPPRVPAAVSLASQNSFYVKPKTVTRRKTCLSAQPQINKKVVPTSTSPNSARRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAEEASQAYESKRLHFELKFQAMEAIKKGSASAAAPRLAALKRNSSADADAANASVSEKFSTTEDSDSLFSHTSPSSVLELDTLASSSIEKFDVPSNNKAVAVYEPSDMVVCQLEELDIPDMSVLNLPEPTAAENPIGTDPNLCSGFDFDRFNIDDFGLDFDEFGDFDDLGDFKDIQIHGFDDNEPSELPDFDFGDIGVDDDEFAGWIEEPLQHNIPCV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04027 365 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 229 - -
Mepo1g04027 365 SUPERFAMILY DNA-binding domain 115 162 IPR016177 GO:0003677
Mepo1g04027 365 CDD AP2 114 155 IPR001471 GO:0003700|GO:0006355
Mepo1g04027 365 Gene3D AP2/ERF domain 114 169 IPR036955 GO:0003700|GO:0006355
Mepo1g04027 365 SMART rav1_2 115 169 IPR001471 GO:0003700|GO:0006355
Mepo1g04027 365 MobiDBLite consensus disorder prediction 1 23 - -
Mepo1g04027 365 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Mepo1g04027 365 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Mepo1g04027 365 Pfam AP2 domain 115 159 IPR001471 GO:0003700|GO:0006355
Mepo1g04027 365 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04027 Mepo-Chr1 46797939 46800491 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04027 1 364 AP2-EREBP Transcription Factor Family AT1G68550 29.737 2.56e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g04027 AP2 5.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04027 - - tpra:123900395 405.601