Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04025 ATGTCTGGTTCTAGAAAATCTAGAGCCAGACAAAGGCCTAACCCTTTGAAACAATCCAAATTAATGACAAGGAAATTGCAGCTTGTTTACGATGATCCCGATGCAACTGATTTATCTGAAGATGAGTCACAACAACCCCGTACCACGACAAAAAGAAGTTTCGTTGAGGTCCCTCTCCCTCTTCATGTACCTGCAGCAGTTTCTTTGACTTCTCAGAACAGCTTCTCTGTGAAGCCAAAGACTGTAGCAAGGAGAAAGACATGTCTTTCAGCACAACCTCAAACCAATAAGAAGGTTGTTCCAACAACAACTGGGAGACGACGATCTTGTGCCATATACCCTGGTGTTCGTATGAGGAAATGGGGCAAATGGGCTGCTGAGATTCGCGATCCTTTCAAAAATGCTAGAATCTGGTTGGGAACTTTCAATAGTGCTGAAGAAGCTTCTCAAGCTTATGAATCAAAAAAGCTTCAATTTGAGCTTAAATCTCAGGCAATGGAGGCAGAAACATACATCAAAAAGGGTTCAGCTTCTGCAGCCCCTCCACTTGCTGCATTGAACGAAAACTCTTCTGCTGATGCTCATGCTGCTAATGCTTCTGTGTCAGGGAAATTCTCAACTACCGAAGACTGTGATAGTTTGTTCTCACACACATCACCTTCTTCCGTGCTTGAGTTGGATACCTTAACATCCAATTCGATTGATACTGAAGCTGTTGCTGTCAATGAAGCGAGTGAAATGGTCTCTTGTCAACTTGAAGAGCTAGAAATTCCAGATATGAGTGGTTTAAACTTGCCTGAGCCAATTGCTGCTGAGAATCCAATTGGGACTGATCCCAATCTTGGTTTTGGATTTGATTTTGATCGGTTTAACATCGACGATTTTGGTCCGGATTTTGATGAATTTGGTGACTCCGGTGGCTTAGTTGACTTCATGGATATTCAAATACATGGTTTTGATGACAATGAACCAAGTGAGCTACCTGATTTTGATTTTGGTGATATCGGTGATGATGATGAATTTGCTGGTTGGATTGAGGAATCCCTTCAACACAATATACCTTGTGTACGCAATGCCTTACAGTTTCAACAAGACACAGGGTTTGGTGATGTTGGTCTTAATGACCAAAACTTTGTACAAGATGAAGAGGATAAATTTGAAAAAAGAAAATTGGAATTATCTTCCAAGTTTGTCTCGGAAGAGAACGGAGGATTTGCTGGCTCTTCTCATCCAAATTCATCACCTCAACATAGCAATGAAATTGATAATGGTGATGGTGATCATATGGAGTAG 1293 0.413 MSGSRKSRARQRPNPLKQSKLMTRKLQLVYDDPDATDLSEDESQQPRTTTKRSFVEVPLPLHVPAAVSLTSQNSFSVKPKTVARRKTCLSAQPQTNKKVVPTTTGRRRSCAIYPGVRMRKWGKWAAEIRDPFKNARIWLGTFNSAEEASQAYESKKLQFELKSQAMEAETYIKKGSASAAPPLAALNENSSADAHAANASVSGKFSTTEDCDSLFSHTSPSSVLELDTLTSNSIDTEAVAVNEASEMVSCQLEELEIPDMSGLNLPEPIAAENPIGTDPNLGFGFDFDRFNIDDFGPDFDEFGDSGGLVDFMDIQIHGFDDNEPSELPDFDFGDIGDDDEFAGWIEESLQHNIPCVRNALQFQQDTGFGDVGLNDQNFVQDEEDKFEKRKLELSSKFVSEENGGFAGSSHPNSSPQHSNEIDNGDGDHME 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04025 430 SMART rav1_2 112 166 IPR001471 GO:0003700|GO:0006355
Mepo1g04025 430 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g04025 430 CDD AP2 111 152 IPR001471 GO:0003700|GO:0006355
Mepo1g04025 430 SUPERFAMILY DNA-binding domain 112 159 IPR016177 GO:0003677
Mepo1g04025 430 MobiDBLite consensus disorder prediction 1 52 - -
Mepo1g04025 430 MobiDBLite consensus disorder prediction 401 420 - -
Mepo1g04025 430 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 255 - -
Mepo1g04025 430 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Mepo1g04025 430 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Mepo1g04025 430 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Mepo1g04025 430 Gene3D AP2/ERF domain 112 167 IPR036955 GO:0003700|GO:0006355
Mepo1g04025 430 MobiDBLite consensus disorder prediction 400 430 - -
Mepo1g04025 430 Pfam AP2 domain 113 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04025 Mepo-Chr1 46778779 46784057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04025 1 355 AP2-EREBP Transcription Factor Family AT1G68550 29.659 1.76e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g04025 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04025 - - tpra:123900395 395.586