Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04009 ATGTTTGCAAGTCGTTCGATAATAAAATCACATGATCTGGAATGGTTTTTCTTGTGTCCTTGTGATTACAAGTATGAAAAGAGTAAAAAGATCAACCGAGCAAGGGAGTTTGGATTTTGGAAAGCTACTGGAATTGAGCATGCTATTAAGATTAATGGTACTGACAAAGTTATTGCAACTAAGAAGATTCTTGTTTTCTATTTGAAAGCTACTGGAAATAAACGCCCTGTTAGGACCAATTGGGTTATACATGAGTATCATGATGCTGTCACCTTTGATGATGATAAACAGGTTTGTTCTGTAATAGCAAGATTCTGTCCAACAGATGAAGAGCTTGTTAAGCACTACCTTAAAAATAAAATACTTGGTAATGATTCCATTGCAAACAATGTTATAGCTGAAGTTGATGTATGCAAGTACGAACCTTGGGACTTACTAGCTTGTTCGGTGATAAAATCTGATGACCAAGAATGGTTTTTCTTGTGCCCTATTGAATATAAGTATGCAAAGAGTAAAAGGTTTAAAAGGACAACTAATAATGGTTTTTGGAAAGCGACCGGAATGGACCGTATCATTAGGATTAGGGGTACCAATAAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAAATCCTGTTCCTGGTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACCTTTGATGATCACCAGGTTTGTTATGTTTAG 720 0.3583 MFASRSIIKSHDLEWFFLCPCDYKYEKSKKINRAREFGFWKATGIEHAIKINGTDKVIATKKILVFYLKATGNKRPVRTNWVIHEYHDAVTFDDDKQVCSVIARFCPTDEELVKHYLKNKILGNDSIANNVIAEVDVCKYEPWDLLACSVIKSDDQEWFFLCPIEYKYAKSKRFKRTTNNGFWKATGMDRIIRIRGTNKVIGIKKTLVYHENPVPGVKTNWIIHEYHDATFDDHQVCYV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04009 239 ProSiteProfiles NAC domain profile. 99 239 IPR003441 GO:0003677|GO:0006355
Mepo1g04009 239 Gene3D NAC domain 108 236 IPR036093 GO:0003677|GO:0006355
Mepo1g04009 239 Gene3D NAC domain 3 104 IPR036093 GO:0003677|GO:0006355
Mepo1g04009 239 Pfam No apical meristem (NAM) protein 104 227 IPR003441 GO:0003677|GO:0006355
Mepo1g04009 239 Pfam No apical meristem (NAM) protein 11 87 IPR003441 GO:0003677|GO:0006355
Mepo1g04009 239 SUPERFAMILY NAC domain 9 101 IPR036093 GO:0003677|GO:0006355
Mepo1g04009 239 SUPERFAMILY NAC domain 104 233 IPR036093 GO:0003677|GO:0006355
Mepo1g04009 239 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677|GO:0006355
Mepo1g04009 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04009 Mepo-Chr1 46652714 46654792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04009 6 87 NAC Transcription Factor Family AT4G35580 47.561 2.29e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo1g04009 NAM 1.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04009 - - mtr:25500588 350.903