Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04003 ATGGAGATGATGCAAGAAGTGAAAGATTATTCACAAGAGGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGAAGAAGAAGAAAGTAGCAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCTACAACTCATCATCATGATGTTACAAATGTTCCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCACACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCAACACCAACATCATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTTGGTAACAACAACAATAACAAAAACAAAGATGTTGTTATTAATGTTCCTGTTCCACAACAAGAAGAACAAGAACAAGAACAACAGCCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGGAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGGGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAAGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAACAACAAAATCATCATGACCCTTTACACAATCAGATGAATTTTAATCATAATATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTACATGAGATCATTAGCACCATCATCAATGTCAATGCCTCAAGGAAGCTTAAGTACAAGATCACAGCAACAAGAAGGAGGAGGAAGCAATGTTTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAAGTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA 1533 0.3457 MEMMQEVKDYSQEELEEDEEEIMTKTTREEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHDVTNVPHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHQHQHHQDATTSNFTNLKQIDFMELSLGNNNNNKNKDVVINVPVPQQEEQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWKRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLAPSSMSMPQGSLSTRSQQQEGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSTSDDNLASPSSIVPSLQHLKVPHHEETLSSSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04003 510 Pfam B3 DNA binding domain 167 270 IPR003340 GO:0003677
Mepo1g04003 510 ProSiteProfiles B3 DNA-binding domain profile. 167 272 IPR003340 GO:0003677
Mepo1g04003 510 Gene3D - 160 280 IPR015300 -
Mepo1g04003 510 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 455 IPR044800 GO:0003700
Mepo1g04003 510 MobiDBLite consensus disorder prediction 378 401 - -
Mepo1g04003 510 CDD B3_DNA 165 254 IPR003340 GO:0003677
Mepo1g04003 510 MobiDBLite consensus disorder prediction 1 66 - -
Mepo1g04003 510 MobiDBLite consensus disorder prediction 11 25 - -
Mepo1g04003 510 Coils Coil 1 32 - -
Mepo1g04003 510 FunFam B3 domain-containing protein 160 280 - -
Mepo1g04003 510 MobiDBLite consensus disorder prediction 469 488 - -
Mepo1g04003 510 MobiDBLite consensus disorder prediction 37 66 - -
Mepo1g04003 510 SUPERFAMILY DNA-binding pseudobarrel domain 163 271 IPR015300 -
Mepo1g04003 510 SMART B3_2 167 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04003 Mepo-Chr1 46606442 46608631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04003 149 450 RAV Transcription Factor Family AT2G46870 45.981 2.91e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo1g04003 B3 1.3e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04003 K09287 - gmx:100781424 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g04003 1 46606442 46608631 Mepo1g04003 1 46606442 46608631 ECH