Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g04001 ATGTTTAATGTTGTTGTCCTCATGAAATCTTTTGTTACTAACATTTTTCTACTTCTTTTGTTCTTTCCTTTAACTTCTTCCCTCCAACAAGTGCAAACAAAACTAGTTGAACCACCTTTGCTTCCAAAAAATTCATGCAATGAAACATGTGGAAAACTCCATGTTCCATTTCCATTCTACATCAACAACACTTCATGTGCATCATTGTCAAGTTCTTTCCACCTCTCATGCTCAAATTCAACCACCCTTTTGATCAAAATAGGTTCACAAAACTATCCCATCTTGGAATTCTTTTCAGATGGTTTGTTAGTAGACTTTCCAGGAACCTCATCGTGTCGACAGTACAACGATTTGAACTCATTTGGTGAGAGGAGTTTTGATGGAAGAAACTACTTTGGTGTATCAGTTGATAATGTTGTTGGTCTCTATGATTGCGAAGATTCTTCACTTTGTAAAGCAGATTGTGAAACAGTTAATCTTCCAGGTTGTGATGGAAGTGTTGGTGGTGGTTCTCTTGGATGTTGTTATCCACTTTCTGATCATAGTATATGGCATATTGGTGAAGGGTTTTCTGTTTTCTCTCAGTTTGGTTGCAGGGGATTTTCTAGTTGGGCTGTTTTGAGAGGGTCTTATTCAGGTAAAAGAGGGGTAAAATTGGAATATGGTATTCCTAAGAACTTTTCTAAGGAGATTTGTGCTAAGAATGCAGATATGGTGAATGCTACAGCAGTTAAAGGTGGCATAAGGTGTGTTTGTCAAGATGGATATGTTGGTGATGGTTTTGATAATGGAACAGGATGCTTACTATCCTGTATCAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGAAAAATGGTTATCATTGCAGGAATTCTTTGTCCAGTTCTTATTGTTGCCTCCTTAGTTACACTATTCTATCTTCTAAAAAGAAAACAAAAGCCAGGAATGTTCGATTCCGAGCAAGCTTATTACCACAACATTTCATTCCGAAAAACGTGTAGAACTCGACTATTCAGCCACCATGAGCTAGAGGAAGCCACCAATGGTTTTGAAGAAAACAGAAAACTCATGCAATGCAATAACAGCACAATGTTTGCCGGTGTTCTTGGTGATGGATCACATGTAGCTATACACAAGTTATTAAAATGTGAGAATGAAAAAGACATGATGCAAGTCATGTCACAAATTGAAGTCCTATCTGCAATTGTACATAGAAATGTTGCATCAATTCTTGGTTGTTGCATTGATTCTAGCTACACTCCTCTAGTGGTTTATGAGTATCCTTCAAATGGTACCTTAGAGGATCATTTACACCAAAAGTTTCAAAACATAGGACAAAAACTTGGTTTACATTGGTATAGGAGATTGAATATTGCAACAGAAATAGCTAGTACTATTGCATTGTTACATTATGATAAATCTCCTCCAATATTCCATCATAACCTAAAGTCTAGCTGCATCTTCCTAGGTGATGATTTTTCTGTCAAGATTTCAGGATTTGGAATACTTAATTCTGATGTTAATAATTATGATTACAAGAATTGTGAAAATCGCGAACGCTTTCGCTTGTGCAAAAATGATGTCTATGACATAGGTGTATTGCTACTGGAGATTATCTACGGAACAAATCAATTGGACACACCTACATTAGCATTGAAGAAAATTAGGGATGGAAAGATCGAAGAAATTGTAGATCCACTTCTTAATTATCATGAGCAACCGCGTCATTGTCAAGAACAGATTCAGATCATTGCTGACCTTGCCACAAGATGTTTGCTGTTTAGTGGAGATGGAAAGATGGGAATGATTGATGTTGCTAGAGAATTGGTTCATTTGACAAAAGAGAGTGTTGATGGAGGAAATGTGAAAGGAATTGCTCTTGAAGAAACATTCTCAAATTCTAGTCTTCTTCAAATGATATCTTTGTCTCCTGATTCTATGAATGTTCCTTGA 1977 0.3662 MFNVVVLMKSFVTNIFLLLLFFPLTSSLQQVQTKLVEPPLLPKNSCNETCGKLHVPFPFYINNTSCASLSSSFHLSCSNSTTLLIKIGSQNYPILEFFSDGLLVDFPGTSSCRQYNDLNSFGERSFDGRNYFGVSVDNVVGLYDCEDSSLCKADCETVNLPGCDGSVGGGSLGCCYPLSDHSIWHIGEGFSVFSQFGCRGFSSWAVLRGSYSGKRGVKLEYGIPKNFSKEICAKNADMVNATAVKGGIRCVCQDGYVGDGFDNGTGCLLSCIKDGKEAYGSDCYIKRHDQRKMVIIAGILCPVLIVASLVTLFYLLKRKQKPGMFDSEQAYYHNISFRKTCRTRLFSHHELEEATNGFEENRKLMQCNNSTMFAGVLGDGSHVAIHKLLKCENEKDMMQVMSQIEVLSAIVHRNVASILGCCIDSSYTPLVVYEYPSNGTLEDHLHQKFQNIGQKLGLHWYRRLNIATEIASTIALLHYDKSPPIFHHNLKSSCIFLGDDFSVKISGFGILNSDVNNYDYKNCENRERFRLCKNDVYDIGVLLLEIIYGTNQLDTPTLALKKIRDGKIEEIVDPLLNYHEQPRHCQEQIQIIADLATRCLLFSGDGKMGMIDVARELVHLTKESVDGGNVKGIALEETFSNSSLLQMISLSPDSMNVP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g04001 658 Gene3D Laminin 229 263 - -
Mepo1g04001 658 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 621 IPR045274 GO:0007166
Mepo1g04001 658 Gene3D Transferase(Phosphotransferase) domain 1 437 631 - -
Mepo1g04001 658 Gene3D Phosphorylase Kinase; domain 1 329 435 - -
Mepo1g04001 658 Pfam Protein tyrosine and serine/threonine kinase 371 547 IPR001245 GO:0004672|GO:0006468
Mepo1g04001 658 ProSiteProfiles Protein kinase domain profile. 358 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g04001 658 FunFam probably inactive receptor-like protein kinase At2g46850 330 435 - -
Mepo1g04001 658 Pfam Wall-associated receptor kinase galacturonan-binding 46 97 IPR025287 GO:0030247
Mepo1g04001 658 SUPERFAMILY Protein kinase-like (PK-like) 339 617 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g04001 Mepo-Chr1 46568073 46570936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g04001 6 620 Receptor kinase-like Gene Family AT2G23450 28.030 9.58e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Mepo1g04001 PK_Tyr_Ser-Thr 4.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g04001 - - gmx:100810557 892.878