Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03983 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTCCGGTTTCATCCAACTGAAGAAGAGCTTCTTCAATACTACTTGAAGAAAAAAGTTTCTTATGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATTCAAGAGAAATGCAAAATAGGAACAACTCCGCAAAATGATTGGTACTTCTTCAGTCACAAAGACAAGAAGTATCCAACCGGAACACGAACCAATCGCGCTACAGCCGCAGGGTTCTGGAAAGCCACCGGTCGTGACAAAGTTATATATAGTAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTACAAAGGTCGTGCTCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTCGACGATAACACCACCAATGACACCAATATGGTGTCGAATATGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCTTCTGGAGAGGGAAGAAGAAGCCACCATTTGTATGATACTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAATAATTATGGAAGGTTTGCTAGGCCTTTTGAATCTACTCTCAACAACAATGGTGGTTATAATAATGAAAGGTTCATGAAACTTCCAAATTTAGAAAGTCCAAAATCAACAAGCATGGAGAACAATGACAACAACAATGATGGGTACCATGCAATTATTCAAGTAGATATGGCTAATGAAAATGAAGGGTCATTCTCTGATCATCATCATAACAACATGGTTAATAATCCATTAGAGGCATCATCATCATCAATGGTGATAGCATGTGGTGATGGTGGTCTTACTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTTAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCCACCCTTAAATCATCATCATCAACTTCATCACTATCAACACAAGCCAGAGCTACTACTACTTCTACTACTACTACTACAACTACTACTTACATTAGTCCCTCACATGACTATGCCAGTGAGATTGACCTCTGGAACTTTGCTCGATCAACTTCCTCCTTGTTGTCATCTTCTGAACCACTGTGTCACGTGTCGAATACGTCGGTGTGA 1296 0.4005 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLKKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTNDTNMVSNMIGDGGQEEGWVVCRIFKKKNHLKTLDSPSGEGRRSHHLYDTCDEGALEQILQQMGRGCKEENYEANYNNNYGRFARPFESTLNNNGGYNNERFMKLPNLESPKSTSMENNDNNNDGYHAIIQVDMANENEGSFSDHHHNNMVNNPLEASSSSMVIACGDGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDLQLPTLKSSSSTSSLSTQARATTTSTTTTTTTTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03983 431 MobiDBLite consensus disorder prediction 366 394 - -
Mepo1g03983 431 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Mepo1g03983 431 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Mepo1g03983 431 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 292 - -
Mepo1g03983 431 FunFam NAC domain-containing protein 24 179 - -
Mepo1g03983 431 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Mepo1g03983 431 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03983 Mepo-Chr1 46340201 46342300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03983 1 430 NAC Transcription Factor Family AT2G46770 52.608 5.57e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo1g03983 NAM 5.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03983 - - ahf:112734309 608.601