Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03971 ATGATATCACTTTCTCATGAAAACCCTTCACCACAAACACAAACCCTTCAACAAAAGCTTCAATTTCTACTCCAAACCCAAACCGAAAATTGGGTCTATGCTATTTTATGGCAAACAACAAAAGATGAAAAAGGTAAACCTTTCTTATCTTGGGGTGAAGGCTATTTCCAAGGAACCAAAGAAACAACAACTTCAAATAAACAAACCGACAGTACCACGTGTGCAAACAAAGATGCTGAATGGTTCTACGTGATGTCGTTGACTCGAAATTTTTCCGTAGGTAATGCTTCTTCAATTTCATTACCTGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAACATGAACTTCAAATCTATAACTGTGAGAGATCCAATGAAGCACACGTGCATGGAATTGAAACATTGATTTGTATTCCGACAACTAAAGGTGTAATCGAAATGGGTTCTTACGACAATATCCAACAAAATTGGAACCTCGTAAACCAAGCCAAATCTATGTTCCAAACATCCTCGTTAGAATCAAACTCAAATTTAGATCTTACCTCCAAAACCCCTCTTGACAAATGTGAAACATTCATCCAAAACACATCTTTTGCCAACATGGGTATCGTCTCTGGCGCTAGCGCTGGAGAAGACACCCATGAGAAGCCAAACTTTTTGCTAGAAAAACATAAAAACGTGTCATCATGTTCTTTAGATTCTGAAGATTCTGATTCAGAATATTGTCCACTATTAGCAACAAAAACAACAACAACAACAAAGAACGATTCTTTTGAGAAAAGAGAACCGAAGAAGAGAGGAAGAAAACCATTATCAGGAACTCAAACACCGATGAACCATGTGGAAGCAGAGAGACAAAGGAGAGATAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCTCTTTTATCAGATGCAGTGGATTACATCAATGAGTTAAAAGCAAAGATCAAAGATTTAGAATCAGTGCAACAAAAAGAATCGAAAAAGGTGAAGATGAAAACGATGGAAATTGTTGATAATAACAGTTCAACTGTGGTAGACCAAAACAAAACTAGTTGTAGTAATAGTCTTATTGCTTTGGAGATTGATGTGAAGATTATAGGAAATGATGCTATGGTGAGAGTTCAAAGTGAGAATGTTAATCACCCTAGTGCAAGATTAATGTGTGTATTGAAGGATTTGAAGTTTAAGGTACATCATGCTAGTATATCAACCGTTAGTGAAGTTATAATGGTTCAAGATGTTGTTGTTAAAGTTCCTAATGAGATGAGAAATGAAATTCTAATTAGGTCTGCAATTCTCATGAAATTATATGACTTTTAG 1371 0.3552 MISLSHENPSPQTQTLQQKLQFLLQTQTENWVYAILWQTTKDEKGKPFLSWGEGYFQGTKETTTSNKQTDSTTCANKDAEWFYVMSLTRNFSVGNASSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHVHGIETLICIPTTKGVIEMGSYDNIQQNWNLVNQAKSMFQTSSLESNSNLDLTSKTPLDKCETFIQNTSFANMGIVSGASAGEDTHEKPNFLLEKHKNVSSCSLDSEDSDSEYCPLLATKTTTTTKNDSFEKREPKKRGRKPLSGTQTPMNHVEAERQRRDKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIKDLESVQQKESKKVKMKTMEIVDNNSSTVVDQNKTSCSNSLIALEIDVKIIGNDAMVRVQSENVNHPSARLMCVLKDLKFKVHHASISTVSEVIMVQDVVVKVPNEMRNEILIRSAILMKLYDF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03971 456 SMART finulus 285 334 IPR011598 GO:0046983
Mepo1g03971 456 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 16 171 IPR025610 -
Mepo1g03971 456 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 341 IPR036638 GO:0046983
Mepo1g03971 456 MobiDBLite consensus disorder prediction 258 273 - -
Mepo1g03971 456 MobiDBLite consensus disorder prediction 256 292 - -
Mepo1g03971 456 Gene3D - 276 345 IPR036638 GO:0046983
Mepo1g03971 456 PANTHER MYC 7 451 IPR045084 GO:0003700|GO:0006355
Mepo1g03971 456 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 279 328 IPR011598 GO:0046983
Mepo1g03971 456 Coils Coil 318 345 - -
Mepo1g03971 456 Pfam Helix-loop-helix DNA-binding domain 283 328 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03971 Mepo-Chr1 46188088 46189458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03971 10 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 36.383 2.47e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g03971 bHLH-MYC_N 3.5e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03971 - K13422 gmx:100804965 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03971 1 46188088 46189458 Mepo1g03971 1 46188088 46189458 ECH