Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03970 ATGTCACCTTCTTCATCTTCTTCTATGATATCACTTTCTCATGAAATTGAAAACCCTTCACCACAAACCCTAACCCTTCAACAAAAACTTCAATTTTTAGTCCAAACCCAATCCGAAAATTGGGTCTATGCCATTTTATGGCAAACAACAAAAGATGAAAAAGGTAAATCTTTCTTATCTTGGGGTGAAGGCTATTTCCAAGGAACCAAAGAAACTACAACTTCAAACAAACAAAACGACAGTAACACGTGTATAAACAAAGATGCTGAATGGTTCTACGTGATGTCGTTGACTCGAAATTTTTCCGTAGGTAATGCTTCTTCAATTTCATTACCTGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAACATGAACTTCAAATCTATAACTGTGAGAGATCCAATGAAGCACACGTGCATGGAATTGAAACATTGATTTGTATTCCGACAGCTAACGGTGTAATCGAAATGGGTTCATACGACAATATCCAACAAAATTGGAACCTCGTACACCAAGCCAAATCTATGTTTCAAACATCCTCGTTAGAATCTAACTCAGAATTAGATCTTATCTCCACAAACCCACTTGACAAATCTATGTTCCAAACATTTGCCGACATCGGTATCCTCTCCGGTTCCGGAGAAGACACTGATGAGACACAAAAGACGATGAACAAAAATTTGCAACAAATGAATAACATTGTTTCATCATGTTCTGTTGATTCTGAAAATTCTGATTCAGAATATTGTCCACCATTAGCAACACCAACAAAAACAAGAATTGAAAAAGATTCTTTTGAGAAAAGAGAACCTAAGAAGAGAGGAAGAAAACCGTTATCAGGAACTCAAACACCGATGAACCACGTGGAAGCAGAGAGACAAAGGAGAGAGAAACTAAACCATAGATTCTATGCTTTAAGATCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCTCTTTTATCAGATGCAGTGGATTACATCAATGAATTAAAAGCAAAGATTGAAGATTTAGAATCAGTGCAACAAAAGGAATCGAAAAAGGTGAAGATGGAAACGATGGAAATTGTTGATAATAACAGTGCAACGACAACTTCAACTGTGGTAGACCAAAAAAGACCTTGTAATTTTAATGCTTTTGAGATTGATGTGAAGATAATAGGAAATGATGCTATGGTGAGAGTTCAAAGTGAGAATGTTAATCACCCTGGTGCAAGATTAATGAGTGTGTTGAAGGATTTGGAGTTTCAGGTACATCATGCTAGTATATCGACCGTTAATGAAGTTATGGTTCAAGATGTTGTTGTTCGAGTTCCTAATGAGATGAGCAAGGAAGAGGGTCTAATTAGATCAGCCATTCTCATGAAATTAGGTCAGTAG 1395 0.3642 MSPSSSSSMISLSHEIENPSPQTLTLQQKLQFLVQTQSENWVYAILWQTTKDEKGKSFLSWGEGYFQGTKETTTSNKQNDSNTCINKDAEWFYVMSLTRNFSVGNASSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHVHGIETLICIPTANGVIEMGSYDNIQQNWNLVHQAKSMFQTSSLESNSELDLISTNPLDKSMFQTFADIGILSGSGEDTDETQKTMNKNLQQMNNIVSSCSVDSENSDSEYCPPLATPTKTRIEKDSFEKREPKKRGRKPLSGTQTPMNHVEAERQRREKLNHRFYALRSVVPNVSKMDKASLLSDAVDYINELKAKIEDLESVQQKESKKVKMETMEIVDNNSATTTSTVVDQKRPCNFNAFEIDVKIIGNDAMVRVQSENVNHPGARLMSVLKDLEFQVHHASISTVNEVMVQDVVVRVPNEMSKEEGLIRSAILMKLGQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03970 464 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 181 IPR025610 -
Mepo1g03970 464 Gene3D - 284 353 IPR036638 GO:0046983
Mepo1g03970 464 MobiDBLite consensus disorder prediction 244 294 - -
Mepo1g03970 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Mepo1g03970 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 348 IPR036638 GO:0046983
Mepo1g03970 464 PANTHER MYC 7 460 IPR045084 GO:0003700|GO:0006355
Mepo1g03970 464 SMART finulus 293 342 IPR011598 GO:0046983
Mepo1g03970 464 MobiDBLite consensus disorder prediction 264 281 - -
Mepo1g03970 464 Coils Coil 326 353 - -
Mepo1g03970 464 Pfam Helix-loop-helix DNA-binding domain 291 336 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03970 Mepo-Chr1 46149438 46151210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03970 16 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.149 2.55e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g03970 bHLH-MYC_N 1.4e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03970 - K13422 gmx:100804965 496.508