Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03961 ATGTTTGAACTAGAAAACATGGAATATAGTCAATATAGTTACTCAGCAGAGGAAGAAACTAGTAGCATATCTTCCATGAGAAAGAAGAAAAACAAGAATACAAAGAGGTTTAGTGATGAACAAATCAAATCATTGGAAACTATGTTTGAGACTGAGACAAGACTTGAACCAAGAAAGAAGTTGCAGTTAGCTAGAGAGCTTGGATTGCAGCCAAGACAAGTTGCTATTTGGTTTCAAAACAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAACAAACTTCAAAATAGTTACAATAATTTGGCTTCAAAATTTGAATCTATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAGAAACTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAGAGTAGTTCACAAGTGAAAGAAGCAAATAGCATGGAAAGTGCATCAGAAAATGGAGGAACAATGAAATGTGATGCTGAGGTGAAACCAAGTCCTTCAATAGAAAGATCAGAACATGTACTTGATGTTCTATCAGATGATGACACAAGCATAAAGGTTGAATACTTTGGTTTAGAAGATGAAACTGCTCTTATGAATTTTGCTGAACATGCTGATGGTTCTTTAACATCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATTTATTAGGCCAATCAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 723 0.3458 MFELENMEYSQYSYSAEEETSSISSMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESASENGGTMKCDAEVKPSPSIERSEHVLDVLSDDDTSIKVEYFGLEDETALMNFAEHADGSLTSPEDWSAFESNDLLGQSSCDYQWWDFWS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03961 240 MobiDBLite consensus disorder prediction 1 37 - -
Mepo1g03961 240 PRINTS Lambda-repressor HTH signature 68 84 IPR000047 GO:0003677
Mepo1g03961 240 PRINTS Lambda-repressor HTH signature 59 68 IPR000047 GO:0003677
Mepo1g03961 240 MobiDBLite consensus disorder prediction 134 170 - -
Mepo1g03961 240 FunFam Homeobox-leucine zipper protein ATHB-7 16 88 - -
Mepo1g03961 240 Pfam Homeodomain 35 86 IPR001356 GO:0003677
Mepo1g03961 240 SMART HOX_1 28 92 IPR001356 GO:0003677
Mepo1g03961 240 CDD homeodomain 37 89 IPR001356 GO:0003677
Mepo1g03961 240 Gene3D - 23 97 - -
Mepo1g03961 240 Pfam Homeobox associated leucine zipper 88 129 IPR003106 GO:0006355|GO:0043565
Mepo1g03961 240 SUPERFAMILY Homeodomain-like 11 90 IPR009057 -
Mepo1g03961 240 MobiDBLite consensus disorder prediction 134 154 - -
Mepo1g03961 240 Coils Coil 80 128 - -
Mepo1g03961 240 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Mepo1g03961 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 168 IPR045224 GO:0003700
Mepo1g03961 240 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03961 Mepo-Chr1 46015261 46016769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03961 36 240 Homeobox Transcription Factor Family AT3G61890 54.545 2.39e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo1g03961 Homeodomain 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03961 K09338 - gmx:100797862 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03961 1 46015261 46016769 Mepo1g03961 1 46015261 46016769 ECH