Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03954 ATGATGGTTGTAGATTTTCTTAGTTCTGGTCCTACCTCAACTGCAATTTCTCAAATCATAGAAATTATTGGTGAGTTCCTATGCAGTGCTAATGATGTACTTGTGAATAAAGACAATTTTAAGGAACTTAGTTCTTATTTGGAAAGAATTATGCCGATTTTGAAAGAATTGAGGAATGAAAAAGTGAGTGATTCTGAGGCATTCAATCGTGCCATTGATATTATGAATCGTGAAACGAAAGCTGCAAACCTACTTGCTCAGGAATGTCGTAAGAAGAGCAAGTTTTATTTGTTAATGAATTGTAGGTCGATTGTAAATCGGTTAGAAAATCATACAAAGGAGCTAAGCAAGGCACTTGGTCTTCTTCCTTTATCAGCATCAGGTCTTTCAACCGGAATATTGGAAGAAATTAAAAAGGTTTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCGGTAGCAGAAGAAGAGATTTTAGAGAAAATCGAGTCAGGGATAAGGGAAAACAGTTTTGATCGTAAGCATGCAAATAATTTAATAAATCTCATTGCTAAGGCTGTTGGAATTACAAATGAGAAGTCGACGATGAAGGCTGAACTTGAAGAGTTTAAGAAAGAAATCGAAAATGCTCGTGTTGATAAGAAAAAGGCTGAAGCTATGCAAATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCCTCATCACCGAGCGAAAGGAAACTGAAATACTTTGCGAAACGGCAATCTTTAGGTACTCGAATCTTGGAGCCTTTACAGTCATTTTATTGTCCTATCACACATGATGTTATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTCGAAGAAGGAAACAAGTTGTGTCCTTTGACATTGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAAGATAGAAACACAATGATTACGATTGCTACTTTGAAAGAAAAAGTACATCAGTTTGGAGATGATGATGAAGTGATAAATTCTCTAAAAACTCTTGAGGATTTGTGTGAGCAGAGAGAGCAACACAGGGAATGGATGATACTTGAGGACTACGTACAAGTTCTTATACAAATTCTTGGTTCGAGAAACCGCGATATAAGGAATCGTGCTCTTGCCATCCTTTGCATTCTAGCAAAAGACAATGAAGAAGCTAAGGAAAGAATTGTAACTGTTGATAATGCGATTGAATCGATCGTTCATTCTCTTGGACGACGTCAGGAGGAAAGGAAGTTAGCAGTTGCATTACTGCTTGAATTATCCAAATATGATTTGCCGCGAGAACACATTGGAAAAGTTCAAGGTTGCATACTTCTATTGGTGACTATGTCTAATGGTGATGACAATCAAGCTGCTAGAGATGCAACTGAAGTATTGGATAATCTTTCATACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAACTATTTCAAGCATTTACTGCAACGTCTCTCCACAGGAGCAGATGATGTAAAGATGATTATGGCCAATACATTAGCCGAAATGGAATTAACTGACCACAATAAGGAGTCCTTATTTGATGGTGGTGTACTTGCTCCACTTCTTCACTTGTTCTTACATAATGATCTTCAGGTGAAAACAGTGGCCACAAAAGCTCTTAAGAATCTATCTAGTTTAAAGAGAAATGGAATTGAAATGATTCGACAAGGGGCCGTGCGACCGTTGCTCGATCTCCTTTACCATCATAGCATACACACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGTCCAAACACCGGTTTTGTTACTAGATTCTGATGATGATGTTTTTAACCTTTTCCCTTTAATTAGTGTGACACAACCTGGTGTACAACAAAACATTATTCAGACCTTTTACGCCTTGTGTCAGTCACCTTCATCTTCAAATATCAAGATGAAGCTAAATGAGTGCGCAGCTATACCAGAATTGGTTAGGTTGTGTGAGAGTGAGAATCTAAACCTAAGAGCAAGTGCTATAAAGTTGTTTTCATGCTTGGTAGAGAGTTGTGATGAATCCGTCATAGTAGAGAATGTTGATCAGAAATGCATCAATACTTTGCTTCAGATCCTACAATCCTCATCTGATGAAGAGGAAATACTTTCTGCTATGGGAATAATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTAGCGTACTTCCAATCATTTATAAATATGTTCAAGATGGTAGAGACCGAGATCTTCAAAGGAGTAACTTAGTCGAGAAAGCAGTCGGTGCCTTACGTCGTTTTACAGTTCCGACACACTTGGAGTGGCAAAAAATTGTAGCTGAAACTGGTATTATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGATCAACCTTGACAAAACAACGTGCGGCATTATGTCTCGCTGAATTTTCGAAAAGCTCGGTTAGTCTCAGCAGACCGATTCCGAAGCAAAAAGGACTACTATGTTGTTTCTCAGCTCCAAACGAAATTGGCTGTAAAGTTCATGGAGGAATATGCACTGTCAAGTCATCATTTTGTCTTTTAGTTGCTGAAGCAATTGGACCTCTCACAAGGAATCTTGGAGAATCTGATTATGGAGTCTGTGAGGCTTCTTTGGATTCTTTATTAACATTGATTGAAGGTGAAAGACTAGAGAGTGGTGGTAAAGTGCTTGCTAAAGCAAATGCAATACCATTAATAATAAAATTTCTAAGTTCTACCTCTCTTGGGTTGCAAGAAAAGTCTCTACATGCTTTAGAAAGGATTTTTCAGCTAGCAGAGTTCAAACAGTTGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGATTTAACTCAGAGGAGTAATGGTAGAGTTAGATCCATGTCAGCAAGAGTATTGGCACATTTGAATGTTCTTCATGATCAATCTTCATACTTTTAA 3021 0.379 MMVVDFLSSGPTSTAISQIIEIIGEFLCSANDVLVNKDNFKELSSYLERIMPILKELRNEKVSDSEAFNRAIDIMNRETKAANLLAQECRKKSKFYLLMNCRSIVNRLENHTKELSKALGLLPLSASGLSTGILEEIKKVCDNMEKAGFKAAVAEEEILEKIESGIRENSFDRKHANNLINLIAKAVGITNEKSTMKAELEEFKKEIENARVDKKKAEAMQMDQIIALLERADAASSPSERKLKYFAKRQSLGTRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKVHQFGDDDEVINSLKTLEDLCEQREQHREWMILEDYVQVLIQILGSRNRDIRNRALAILCILAKDNEEAKERIVTVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLPREHIGKVQGCILLLVTMSNGDDNQAARDATEVLDNLSYSDQNVILMAKANYFKHLLQRLSTGADDVKMIMANTLAEMELTDHNKESLFDGGVLAPLLHLFLHNDLQVKTVATKALKNLSSLKRNGIEMIRQGAVRPLLDLLYHHSIHTSSLWEDVAAIIMQLAASTISQDVQTPVLLLDSDDDVFNLFPLISVTQPGVQQNIIQTFYALCQSPSSSNIKMKLNECAAIPELVRLCESENLNLRASAIKLFSCLVESCDESVIVENVDQKCINTLLQILQSSSDEEEILSAMGIICHLPEIDQITQWILDASVLPIIYKYVQDGRDRDLQRSNLVEKAVGALRRFTVPTHLEWQKIVAETGIITVLVQLLESGSTLTKQRAALCLAEFSKSSVSLSRPIPKQKGLLCCFSAPNEIGCKVHGGICTVKSSFCLLVAEAIGPLTRNLGESDYGVCEASLDSLLTLIEGERLESGGKVLAKANAIPLIIKFLSSTSLGLQEKSLHALERIFQLAEFKQLYGASAQMPLVDLTQRSNGRVRSMSARVLAHLNVLHDQSSYF 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03954 1006 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Mepo1g03954 1006 SUPERFAMILY RING/U-box 249 331 - -
Mepo1g03954 1006 CDD RING-Ubox_PUB 263 312 IPR045210 -
Mepo1g03954 1006 Gene3D - 339 632 IPR011989 -
Mepo1g03954 1006 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1006 - -
Mepo1g03954 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 338 IPR013083 -
Mepo1g03954 1006 Gene3D - 633 855 IPR011989 -
Mepo1g03954 1006 Coils Coil 186 220 - -
Mepo1g03954 1006 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Mepo1g03954 1006 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Mepo1g03954 1006 Gene3D - 14 126 IPR036537 GO:0007166
Mepo1g03954 1006 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 406 446 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 917 958 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 530 570 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 799 839 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 364 404 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 571 614 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 665 705 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 750 796 IPR000225 GO:0005515
Mepo1g03954 1006 SMART arm_5 447 488 IPR000225 GO:0005515
Mepo1g03954 1006 SUPERFAMILY ARM repeat 345 996 IPR016024 -
Mepo1g03954 1006 Gene3D - 864 1004 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03954 Mepo-Chr1 45875040 45879984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03954 261 1006 U-box Gene Family AT1G76390 28.535 1.46e-62 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03954 - - psat:127076110 1706.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03954 1 45875040 45879984 Mepo1g03954 1 45875040 45879984 ECH