Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03951 ATGAGGCCGGTTTTCGCTGGAAATTTGGAGTACGATACTCGTCAATCAGAGCTTGAACGCTTGTTCTCAAAGTATGGAAGAATTGAACGTGTTGATATGAAATCTGGATTTGCCTTTGTCTATTATGAAGACGAACGTGATGCTGAAGAAGCAATTCGTGCGCTTGACAATATTCCATTTGGTCATGACAAGCGACGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCACCGTGATGGCTCAAAGCCAAACCAGAAGCCCACTAAGACTCTATTTGTGATTAACTTTGACCCGATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGGCCGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTGGATAGAGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGACAGGGTCGACAATTATGGTGGCAGTCCCAGAAGAGGAGGGGGTCTTGCTAGATCTCCCAGTCCAGGTTATCGCAGGCGACCAAGTCCAGACTATGGCCGTCCACGTAGTCCTGTGTATGATAGGTATAGTGGACCGGACAGGAACAGGAGTCCCGATTATGGCAGGAACAGGAGTCCCGATTATGGCAGGAACAGGAGTCCTGAATATGGCAGATACCGCAGTCGTTCACCAGTGCGAAGGTCAAGAACTTAG 750 0.4707 MRPVFAGNLEYDTRQSELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGHDKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGGGLARSPSPGYRRRPSPDYGRPRSPVYDRYSGPDRNRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03951 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mepo1g03951 249 MobiDBLite consensus disorder prediction 206 241 - -
Mepo1g03951 249 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Mepo1g03951 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 241 - -
Mepo1g03951 249 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Mepo1g03951 249 MobiDBLite consensus disorder prediction 165 249 - -
Mepo1g03951 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mepo1g03951 249 SMART rrm1_1 92 158 IPR000504 GO:0003723
Mepo1g03951 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Mepo1g03951 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mepo1g03951 249 Gene3D - 1 82 IPR012677 -
Mepo1g03951 249 Gene3D - 83 171 IPR012677 -
Mepo1g03951 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Mepo1g03951 249 SUPERFAMILY RNA-binding domain, RBD 2 163 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03951 Mepo-Chr1 45852983 45855646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03951 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.370 3.49e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03951 K12893 - gmx:100797709 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03951 1 45852983 45855646 Mepo1g03951 1 45852983 45855646 ECH