Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03929 ATGGCACATCTAGAGTGTAATCTAAGGGCCCCAGGAGGAAGTTCTCAACAAGAAAAAGGTGTTAAAAATGATGATTTGTATGAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTGGATGTTCCTAATACTGGTGACAGAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTGCAAGCATCCACTGATCAGGAATTGAATCAGGAAATTCCACATTTCAATTTACCGTCGAAGATTTTATGCCGTGTCGTCAATATTCGGTTGTTGGCTGAGCAAGAAACTGATGAGGTTTATGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGTAGATCCTGATCCAAATCCTTCTGATTCTCCAAAACAGAAGTTTCACTCATTTTGCAAAATATTAACAGCATCTGATACTAGCACACATGGAGGATTTTCAGTTCTGAGAAAGCATGCTACTGAGTGCTTGCCTCCATTGGACATGACACCAGCAACTCCAACTCAGGAGCTAGCAGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAACACATATATAGAGGTCAACCGAGGAGGCACCTGCTTACAACCGGCTGGAGTACATTTGTCGCATCCAAAAGATTGGTGGCCGGAGATGCTTTTGTTTTCCTAAGGGGAGAGAACGGGCAACTGAGAGTTGGCGTTAGGCGTATAGCTAAACAGCACAATCCTATGCCTTCGTCTGTGATATCAAGCCAAAGCATGCATCTTGGTGTGCTTGCTACAGCTTCTCATGCTGTTATGACTCGTACCATGTTCGTCGTTTATTACAAACCAAGGACTAGTCAGTTTATTGTTGGTTTGAATAAGTATTTGGAGGCAGTCAGCAATCATAAGTTTTCTGTTGGTATGAGATTTAAGATGAGATTTGAAGGAGAGGACTCACCTGAAAGAAGATTTTCTGGCACTATTGTTGGGGTTGGGGATGTTTCTGCAGGATGGTCAAATTCTCACTGGAGATCATTGAAGGTTCAATGGGATGAAGCAGCAACAATTCCAAGACCAGAAAGAGTTTCTTCATGGGAGATAGAACCTTTTATAGCTTCTCCTACTTTGAATGTCACTCAAACATCAGTGAAAAGCAAAAGATCTAGGCCTGCCGATGTTTCATCTTGTGGTTTTTGGTATCCTGGATCATCCCAAGCTCACGATCATACCCAATTAACCGGTGCTGCCGAATTCCAAGGCAAGGAGAGTCAGATTGTTAGCTCTAGAGTCTTGGTGGAAGGAATTTGGCCTAATTCACCACATTTAAATATAACTTCCAGCCCTTATGCTAACACAAACATCACAGCTAGACCGAGCGATGGCCTCAGATGCGACCGAGTAGAAGACCCGAAAAAGAACGAGAATCCTCTAGATTGTTGGTTATTTGGAGTTAATTTGAATAACAAAAACAAATCTTGCAATGTTAATTCATGTTTAGAAAAAGAACTTGGATGTCCAAGTTTAACCATTGTTACTACAAGTGGTCCCAAAGAATCTATTATCCTTACCACCAATGCATGTGAAACTGAAAAGGTTCAGAGTCCTAACTATTCACTGTCCAACAAGGGGCAGCAGAAGAAAATAATTTCTGATGCATCACCAAATGAATGGCAGAACAAGCTGGCTACTGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGGAAGGTGTAGCTGTTGGTCGTGCACTTGACTTAACCATGTTAAGTGGTTATGATGAACTCATAGATGAAGTTGAGAAATTATTTGATATTAAAGGAGAGTTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTCGGTGATGATCCATGGCCGTAA 1878 0.4137 MAHLECNLRAPGGSSQQEKGVKNDDLYEELWKLCAGPLVDVPNTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIRLLAEQETDEVYACVALLPESDQTEPVDPDPNPSDSPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTPATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGENGQLRVGVRRIAKQHNPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIVGLNKYLEAVSNHKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSAGWSNSHWRSLKVQWDEAATIPRPERVSSWEIEPFIASPTLNVTQTSVKSKRSRPADVSSCGFWYPGSSQAHDHTQLTGAAEFQGKESQIVSSRVLVEGIWPNSPHLNITSSPYANTNITARPSDGLRCDRVEDPKKNENPLDCWLFGVNLNNKNKSCNVNSCLEKELGCPSLTIVTTSGPKESIILTTNACETEKVQSPNYSLSNKGQQKKIISDASPNEWQNKLATVPSMRTRTKVQMEGVAVGRALDLTMLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWP 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03929 625 FunFam Auxin response factor 293 364 - -
Mepo1g03929 625 SMART B3_2 131 233 IPR003340 GO:0003677
Mepo1g03929 625 Pfam Auxin response factor 257 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo1g03929 625 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Mepo1g03929 625 ProSiteProfiles PB1 domain profile. 558 625 IPR000270 GO:0005515
Mepo1g03929 625 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Mepo1g03929 625 Gene3D - 554 625 - -
Mepo1g03929 625 SUPERFAMILY CAD & PB1 domains 553 624 - -
Mepo1g03929 625 Gene3D - 128 232 IPR015300 -
Mepo1g03929 625 CDD B3_DNA 129 231 IPR003340 GO:0003677
Mepo1g03929 625 Gene3D - 293 364 - -
Mepo1g03929 625 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g03929 625 FunFam Auxin response factor 129 233 - -
Mepo1g03929 625 Pfam AUX/IAA family 555 624 IPR033389 -
Mepo1g03929 625 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 624 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo1g03929 625 SUPERFAMILY DNA-binding pseudobarrel domain 123 260 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03929 Mepo-Chr1 45654868 45659777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03929 26 625 B3 DNA Binding Superfamily AT4G23980 55.375 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo1g03929 AUX_IAA 2.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03929 K14486 - gmx:100795763 961.829