Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03927 ATGGAGCAGCAGCAACAACAACATTTGAACTTTACAACCAAACCTGACGTGGCAGTAAAAACCCTAACAACCCAGATTCCCGCCGCCAAATCCGGGCGTGGCGGAACCAGACATCCGGTTTTCCACGGCGTCAGAAAACGGCGGTGGGGAAAATGGGTGTCAGAGATTAGAGAACCAAGAAAAAAGTCAAGAATATGGCTAGGGTCTTTTCCGGCGCCGGAGATGGCTGCAAAGGCTTATGATGTTGCTGCATATTGTTTGAAAGGTTGTAAAGCTCAGCTTAATTTTCCTGAGGAAGTGCACCGTCTGCCGGTGCTTCCTCCGCCGTCTATATGTACTCCTAGGGATATTCAAGCTGCCGCGGCTAAAGCCGCTCGTATGATGGTTAAGGCTGTTACTTCGCCGGAGGATAGTGGCAATGATTCTGGTGGTAGTGGTGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTTGTGAATGGAACGTGGTGGAGTTACTCTGTTGCGGTGGTGCCGGAGATTGAACTTCCTTAG 540 0.5037 MEQQQQQHLNFTTKPDVAVKTLTTQIPAAKSGRGGTRHPVFHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGCKAQLNFPEEVHRLPVLPPPSICTPRDIQAAAAKAARMMVKAVTSPEDSGNDSGGSGGGDDFWGEIELPELVNGTWWSYSVAVVPEIELP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03927 179 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Mepo1g03927 179 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Mepo1g03927 179 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Mepo1g03927 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 136 - -
Mepo1g03927 179 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Mepo1g03927 179 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Mepo1g03927 179 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Mepo1g03927 179 FunFam Ethylene-responsive transcription factor 2 39 98 - -
Mepo1g03927 179 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Mepo1g03927 179 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03927 Mepo-Chr1 45597637 45598407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03927 7 167 AP2-EREBP Transcription Factor Family AT1G01250 58.721 1.50e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo1g03927 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03927 K09286 - gmx:100806544 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03927 1 45597637 45598407 Mepo1g03927 1 45597637 45598407 ECH
Mepo3g04227 3 51286709 51287485 Mepo1g03927 1 45597637 45598407 PCT