Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03925 ATGAAGATTGAAGTGGGTTTAGGAGGAAATAGGTTATGGAATGAAGATGAAAAAGCTATGGTTGTTGAAGTGTTAGGTGTTAATGCTTTTGATTATTTGGTTACAAATTCAGTTTCAAATGAGAATCTTTTGACAGCAATTGGGAGTGGTGAGAATCTTGAAAACAAGCTTTCTGATCTAGTTGAAAGATCTAATGTTTCGAATTTCAGTTGGAATTATGCGATTTTTTGGCGAATTTCTCAGTCAAAGTTTGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCTAAAGAGGAGGAAAAGGAACAAAATTTGGGGATGAAAAGTGTTGTTGAAGATGAAAAGCAACAAAGAATGAGGAAAAGGGTGTTACAGAAGCTTCATGCAACATTTGGTGGTTTAGATGATGACAATTATGCTTTTGGATTGGACCGTGTGACCGATACGGAGATGTTCTTTCTTGCATCAATGTATTTCTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGTTATGTGATGCATTGAAATCTAGTAGCTCTGATTATTGTGTTAGGGCTTTTTTGGCTAAATCTGTTGGATTTAAGACTATCGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAACGGTTGGCGAGAGCTTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCGACACAATCATCGTTTGCTAGGGCTACGTCGATTTCATCGTTGGATGGAAAGAGAGATGAGAATGCTCCTTTTTCTTGTTTGAAAGTTGGGGAGAGTGTTAAGAACAATAGTAATAATAATGGTAATCTTCATCATCAGAATAATAATAATCATGGTAGAGTTGAGGGGATTGGAGTTCCCAAGATTTTTGGGCAGGATTTGAACTCGGCCACACATTTTCGGGAGAAACTTGCTATTAGGAAAATGGATGATAGGCAATCGTGGGGAGGCCGTCCGAATGGGAATGGAATTAGTTTTCCAAATGGTGCTCATGGTTCAAGTTGGAGAGGTAGTCAAGTTGTGAGGCAGCATGCGCCTGTCGATGTTTTTGCTCCTAGGCCTTCATCGAGCAATGCAGCCGAGCTAGCAAATGGTGGGAGGCAAGATTTCGTGCTCAACAACTATCAACAGCAACGGAAGCCACAAATGCAAATTGATTTTTCAGGAGCCACATCGAGACCTTCAGTGAGATCAATTGTTGGTGAATCAGAGCTTTCTGATGTTGAAGCTTCTTGCAGGGAGGAGAATCCCAGTCCCTCCGATGATAGGAGGCCAAGGAAACGTGGCAGAAAGCCGGCAAATGGAAGAGTAGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGACGCGAGAAGCTAAACCAGCGTTTTTATGCTTTACGAGCTGTTGTGCCGAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAGCTCAAGACGATGGAATCCGAGAGAGAGCAATTAGGAATCACTTCTAGAGATGGATCATCATCGGCACTGCCAGCAAACTCTAGAGCAGAAAATCATCAAAGTAGAGCTCCTGATATCGATATTCAAGCTGCACAAGATGGAGTTATCGTAAAGGTGAGTTGTTCTATTGATGTTCATCCTATTTCAAAACTTGTCCAATCATTCAAAGACACCGAAATCGATATCGTTGAGTCGAAACTCAATGCTGCAAATGATACTGTCTTCCACACATTCATAATTAAGTCACAAGGTTCCGAGCAGCTGACAAAGGAGAAGTTGATTGCAGCATTTTCCAAAGAAACCAACTCCTTATAG 1866 0.411 MKIEVGLGGNRLWNEDEKAMVVEVLGVNAFDYLVTNSVSNENLLTAIGSGENLENKLSDLVERSNVSNFSWNYAIFWRISQSKFGDWVLGWGDGCCREPKEEEKEQNLGMKSVVEDEKQQRMRKRVLQKLHATFGGLDDDNYAFGLDRVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSSSSDYCVRAFLAKSVGFKTIVLVPTDLGVVELGSVRTVGESFELLQTIKSVFSTQSSFARATSISSLDGKRDENAPFSCLKVGESVKNNSNNNGNLHHQNNNNHGRVEGIGVPKIFGQDLNSATHFREKLAIRKMDDRQSWGGRPNGNGISFPNGAHGSSWRGSQVVRQHAPVDVFAPRPSSSNAAELANGGRQDFVLNNYQQQRKPQMQIDFSGATSRPSVRSIVGESELSDVEASCREENPSPSDDRRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQLGITSRDGSSSALPANSRAENHQSRAPDIDIQAAQDGVIVKVSCSIDVHPISKLVQSFKDTEIDIVESKLNAANDTVFHTFIIKSQGSEQLTKEKLIAAFSKETNSL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03925 621 MobiDBLite consensus disorder prediction 326 354 - -
Mepo1g03925 621 CDD bHLH_AtAIB_like 449 526 - -
Mepo1g03925 621 Pfam Helix-loop-helix DNA-binding domain 456 502 IPR011598 GO:0046983
Mepo1g03925 621 MobiDBLite consensus disorder prediction 515 541 - -
Mepo1g03925 621 FunFam Transcription factor bHLH13 445 519 - -
Mepo1g03925 621 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 241 IPR025610 -
Mepo1g03925 621 MobiDBLite consensus disorder prediction 399 414 - -
Mepo1g03925 621 MobiDBLite consensus disorder prediction 399 463 - -
Mepo1g03925 621 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Mepo1g03925 621 MobiDBLite consensus disorder prediction 333 354 - -
Mepo1g03925 621 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 518 IPR036638 GO:0046983
Mepo1g03925 621 PANTHER MYC 42 613 IPR045084 GO:0003700|GO:0006355
Mepo1g03925 621 MobiDBLite consensus disorder prediction 517 536 - -
Mepo1g03925 621 Gene3D - 448 516 IPR036638 GO:0046983
Mepo1g03925 621 SMART finulus 458 507 IPR011598 GO:0046983
Mepo1g03925 621 Coils Coil 491 518 - -
Mepo1g03925 621 MobiDBLite consensus disorder prediction 422 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03925 Mepo-Chr1 45559103 45561939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03925 9 621 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.292 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g03925 bHLH-MYC_N 1.5e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03925 - - gmx:100807078 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03925 1 45559103 45561939 Mepo1g03925 1 45559103 45561939 ECH
Mepo3g04226 3 51267113 51269590 Mepo1g03925 1 45559103 45561939 PCT