Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03906 ATGGTGATTAAACGTAGTGTTAAAGTTAAAATGCCGAAATTGAAACGTTGTAAATTGGATGAGCCTCATTGTGAAGATGAAGAACATGAAGGTTGTTCAGGGAGTCAGAAGAAGCATAAAGTGAATGGGTTTAATTCTGAAGTGGATTTTGATACTGGTTCTGCTTCATGGAACAGTGAAGTTACAAATAATGGTGTTGTTGGCGAAGTTGAATTGAATTCATCGCGTAAAACGGTGAAAGTACGGTTCTCGTGTGGTGGTCCTCAGGTGCTTCCGTTGAGCTTTGAAGACGATGGTAAGGTTATGGTGAAGACCGGGAATAATGGTTCTGGTTCCGGTCTTAGTTTCGAGGGTGCAGATGAAAAGATAAACAGGAATGTTGGAACGAGGAAAGATGTCTATAGGCTGGAGGAATTTACTTTGGGTGATATTGTTTGGGCGAAATGCGGGAAGAGGTTTCCGGCTTGGCCTGGTGTGGTGATTGATCCTCTCTTAGAGGCTCCTCAATCCGTCATAGACTGTTGTGTTCCGGATACACTTTGTGTGATGTTTTTCGGTTATTCGAAAAATGGAACAAGGGATTATGCTTGGGTGAAGCAGGGAATGGTATTTCCCTTTGCAGAATTCATGGACAGATTTCAGGGGCAGACACAATTGTTCAAGAGCAAACCGAGTGACTTTCGGAAGGCGTTGGAGGAGGCAAAGTTGGCAGAAGATGGTATTCTGGAATCACAGTTGAGAGCGGAGGAAATGACTGACGTAGAAGCACATCCTGATAAACATCAACAGGTCTCAGCTTCAAATATTGATCGAGAATATTACTGCCAAGATAAGGATGCCAGATGTTGTGCTAGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGTCATGCACCACAATTTCTATGCAAACATTGTGTCAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGTGATAAGATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGGAAAAAATGAATTGTAAATTACCGGAATTGCCAACATACAAGCCAAAAATCAAATCAGTGATGAGTAGCCAAAACATTGTGGTACCTGAGAAGTACAGATCAATGGAGAATAGTCAAAACGGTGTGGTACCTGAGAAGTTAATGGTGGTGTGCAATGGAATGGAAGGAATTTACATCCCAAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGATTCAAGGAAGCGGACACCGAGTGAATGGGAAAGACACACTGGAAGCAGAGCTAAAAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCACTTGAAAAATGGATCACAGAGCACATTCCAGAAGATGGAGTTTCCCAGGATTTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCCGTTCATGCAAAATGGACGACTGAAAGATGTGCTATTTGTAGATGGATTGAAGACTATGAGGATAACAAAATTATCATCTGTAACAGATGCCAAATAGCAGTCCACCAAGAATGCTATGGTGCAAAGCATGTTCAGGATTTTACTTCCTGGGTGTGTAGAGTATGCGAAACTCCCGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACGTGAAGTTGTTTTCAAAAACCCTGAGGTCATGGAACCTGCCCTCGGAATTCTTAGAATTCCTTCTAATTCCTTTGTGAAGACTTGTGTAATTTGTAAACAAAGCCATGGTTCTTGTACAAGTTGTTGCAAGTGTTCTACTCATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATTCCATGGTGAAGAATGGGACTACAATAACAAAGAAGATAATATACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTACTGGTTTCACATTCATCCCTGGGGATTTTTGCTCCCAGAACTTTGATTGAAAATCACAAAGGATGCTTCCGGGGATCTAGGCTGGTCTCATCAAAGAATATAGAGCTCAATGAAGGTTCATCCCATGAAAATAATAGAGTCGAGCCATTTTCTACTGCGAGATGTCGTGTGCACCTAAGGTCTTCAAATAAGAGAGCTGATGTTGCAATTATTCATTTGCTGAGGGGACCCAGTCTTCATTCTTTAGGTGAAATAACTCAATTGAACAACTATAAGGATGCTGAAGTATTTACTTCTTTCAAGGACCGTCTTCACCATCTGCAGAAAACTGAAAATCTTAGAATTTGCTTCGGAAAGTCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATCTACAAGAAGGAGATATGGTTGTTGAGTATCGAGGTGAGCAGGTAAGGCGTAGTGTCGCTGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTTAAGATCAGCGAGGAGGTTGTCATCGATGCAACACACAAGGGCAATATAGCACGTTTAATAAACCACTCTTGCACGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTAATCAAGGGAACCGGATTGTTCTTATCGCGAAAACCAATGTTTCTGCTGGTCAAGAACTTACGTATGATTACTTGTTCGATCCAGACGAGCCAGAAGAACTGAAAGTTCCCTGCCTTTGCAGAGCTCCCAACTGTAGAAAATTTATGAACTAG 2850 0.4168 MVIKRSVKVKMPKLKRCKLDEPHCEDEEHEGCSGSQKKHKVNGFNSEVDFDTGSASWNSEVTNNGVVGEVELNSSRKTVKVRFSCGGPQVLPLSFEDDGKVMVKTGNNGSGSGLSFEGADEKINRNVGTRKDVYRLEEFTLGDIVWAKCGKRFPAWPGVVIDPLLEAPQSVIDCCVPDTLCVMFFGYSKNGTRDYAWVKQGMVFPFAEFMDRFQGQTQLFKSKPSDFRKALEEAKLAEDGILESQLRAEEMTDVEAHPDKHQQVSASNIDREYYCQDKDARCCASCGLMLPCKTMKKVKDSSHAPQFLCKHCVKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTEHFKDLENTDYYCPDCKEKMNCKLPELPTYKPKIKSVMSSQNIVVPEKYRSMENSQNGVVPEKLMVVCNGMEGIYIPKLHLIMCKCVSCDSRKRTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWITEHIPEDGVSQDLDQQQVLAFLQEKYEPVHAKWTTERCAICRWIEDYEDNKIIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQREVVFKNPEVMEPALGILRIPSNSFVKTCVICKQSHGSCTSCCKCSTHFHVMCASRAGYTMELHSMVKNGTTITKKIIYCAVHRVPSPDSVLVSHSSLGIFAPRTLIENHKGCFRGSRLVSSKNIELNEGSSHENNRVEPFSTARCRVHLRSSNKRADVAIIHLLRGPSLHSLGEITQLNNYKDAEVFTSFKDRLHHLQKTENLRICFGKSGIHGWGLFARRDLQEGDMVVEYRGEQVRRSVADLREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCTPNCYARILSLGNQGNRIVLIAKTNVSAGQELTYDYLFDPDEPEELKVPCLCRAPNCRKFMN 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03906 949 PANTHER PHD FINGER PROTEINS 44 926 - -
Mepo1g03906 949 SUPERFAMILY SAND domain-like 418 478 IPR010919 -
Mepo1g03906 949 SUPERFAMILY FYVE/PHD zinc finger 518 583 IPR011011 -
Mepo1g03906 949 ProSitePatterns Zinc finger PHD-type signature. 521 566 IPR019786 -
Mepo1g03906 949 CDD SET_SETD1-like 797 945 - -
Mepo1g03906 949 Gene3D - 413 495 IPR010919 -
Mepo1g03906 949 ProSiteProfiles Post-SET domain profile. 933 949 IPR003616 -
Mepo1g03906 949 Gene3D SET domain 789 949 IPR046341 -
Mepo1g03906 949 FunFam Histone-lysine N-methyltransferase 570 689 - -
Mepo1g03906 949 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 949 IPR025780 -
Mepo1g03906 949 FunFam Histone-lysine N-methyltransferase 782 949 - -
Mepo1g03906 949 Pfam PHD-finger 533 567 - -
Mepo1g03906 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 569 IPR013083 -
Mepo1g03906 949 SMART PWWP_4 139 207 IPR000313 -
Mepo1g03906 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 688 IPR013083 -
Mepo1g03906 949 ProSiteProfiles SET domain profile. 807 924 IPR001214 GO:0005515
Mepo1g03906 949 ProSiteProfiles PWWP domain profile. 141 209 IPR000313 -
Mepo1g03906 949 Pfam PWWP domain 142 237 IPR000313 -
Mepo1g03906 949 ProSiteProfiles Zinc finger PHD-type profile. 518 569 IPR019787 -
Mepo1g03906 949 ProSiteProfiles Extended PHD (ePHD) domain profile. 572 687 IPR034732 -
Mepo1g03906 949 SMART PHD_3 520 567 IPR001965 -
Mepo1g03906 949 SMART PHD_3 321 373 IPR001965 -
Mepo1g03906 949 SMART PHD_3 631 687 IPR001965 -
Mepo1g03906 949 ProSiteProfiles Zinc finger PHD-type profile. 319 375 IPR019787 -
Mepo1g03906 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 379 IPR013083 -
Mepo1g03906 949 CDD PHD_TCF19_like 322 372 - -
Mepo1g03906 949 CDD PHD_ATX3_4_5_like 520 566 IPR042011 -
Mepo1g03906 949 SUPERFAMILY FYVE/PHD zinc finger 319 381 IPR011011 -
Mepo1g03906 949 Pfam PHD-finger 321 375 IPR019787 -
Mepo1g03906 949 SUPERFAMILY Tudor/PWWP/MBT 137 265 - -
Mepo1g03906 949 SUPERFAMILY SET domain 798 949 IPR046341 -
Mepo1g03906 949 SMART set_7 807 930 IPR001214 GO:0005515
Mepo1g03906 949 Pfam SET domain 818 923 IPR001214 GO:0005515
Mepo1g03906 949 Gene3D - 131 245 - -
Mepo1g03906 949 SMART PostSET_3 933 949 IPR003616 -
Mepo1g03906 949 Pfam PHD-zinc-finger like domain 574 686 - -
Mepo1g03906 949 CDD PWWP_AtATX3-like 142 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03906 Mepo-Chr1 45377448 45387775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03906 278 346 EF-hand Containing Proteins AT5G28340 57.971 2.09e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo1g03906 zf-HC5HC2H_2 1.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03906 - - gmx:100793624 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03906 1 45377448 45387775 Mepo1g03906 1 45377448 45387775 ECH