Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03904 ATGGACATCTTGAAGGTCCTTTTTTACTTAATCTTTCCTGTCGTATACGCCTTAAACGATTGCCCTTTTTCTTTGTGTGGCAACAATAGTTTCCTAATTCGTTTCCCCTTTCAATTAGGTGAGCAATATCCTTATTGTGGCTATCCTGGTTTCAACTTAAATTGTACCAATGATAGCAAAACAATTCTAAAACTTCCTTACTCTGAAGAATTCTATGTACGCAGCATAAACTATCTCACGCAACAGATACAACTCTATGATCCTGATGATTGTCTTCCAAAACGTCTTCTAAGCCTCAATTTTTCAAATTCTCCTTTCATTGCTTCTTTTAGTCGTGACTACACATTCTTAGGCTGTTCATCTCAGAATATAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAACTCTACATATTTTGTATCAGCCATTCCTTCAGTTTACTTTGTCAATTCTCTATCTGGTTGCTCTGTTATAAAAAATCTTTCAGTTCCAATTGCAAGACCAGAACGGTTTCAAGAAAATCTAAGAGATGACCTTAGTGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTTATTGTGAATCACATCAGCTAATGTGTGGATTTGAAAGCATTAACAGCAATCAAGTTGTCTGTTTCTCTGATTACCAACCAGGTACATCGCGGCAAGGACTTAAGATTTTCAGAATCATAGCATTGTGCGTTACGGGACCAGCTCTGATCTTTGTTATTCTAATGGCAAGTTGTGTGTGCTACAATGATAGAATAGGCAACATTACCAGAAGTGCTGCTTCTCGGTCAGCACCAGCGGCAATATCACCGCAACCTGAAGCCACATTAATTGCAGGTTTAGATGAATCCACAATTGAATCTTATGAGAAAGTAATTATTGGGGAGAGTCGACGTGTTCCTGGACCGAACGACGGATGTTGTTGGATATGCTTGGCAGAATACAACAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTGATTGCATTGATGAGTGGCTTCGTATGAATGTTACATGCCCCGTTTGTCGTAACTCTCCTGCTCCTTCTCCTCTTAATATTGCCTCTAGTAATGTTTGA 1116 0.3889 MDILKVLFYLIFPVVYALNDCPFSLCGNNSFLIRFPFQLGEQYPYCGYPGFNLNCTNDSKTILKLPYSEEFYVRSINYLTQQIQLYDPDDCLPKRLLSLNFSNSPFIASFSRDYTFLGCSSQNIGSQFIPIDCLSNSTYFVSAIPSVYFVNSLSGCSVIKNLSVPIARPERFQENLRDDLSADLQLTWDKPDCSYCESHQLMCGFESINSNQVVCFSDYQPGTSRQGLKIFRIIALCVTGPALIFVILMASCVCYNDRIGNITRSAASRSAPAAISPQPEATLIAGLDESTIESYEKVIIGESRRVPGPNDGCCWICLAEYNSKETVRCIPECKHCFHADCIDEWLRMNVTCPVCRNSPAPSPLNIASSNV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03904 371 CDD RING-H2_EL5-like 313 356 - -
Mepo1g03904 371 Pfam Wall-associated receptor kinase galacturonan-binding 21 87 IPR025287 GO:0030247
Mepo1g03904 371 Pfam Ring finger domain 314 356 IPR001841 -
Mepo1g03904 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 361 IPR013083 -
Mepo1g03904 371 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 359 IPR046948 -
Mepo1g03904 371 SMART ring_2 314 355 IPR001841 -
Mepo1g03904 371 ProSiteProfiles Zinc finger RING-type profile. 314 356 IPR001841 -
Mepo1g03904 371 Pfam Wall-associated receptor kinase C-terminal 153 217 IPR032872 -
Mepo1g03904 371 SUPERFAMILY RING/U-box 307 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03904 Mepo-Chr1 45365078 45367584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03904 26 361 C3H Transcription Factor Family AT2G25410 43.402 1.40e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03904 - - aprc:113851081 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03904 1 45365078 45367584 Mepo1g03904 1 45365078 45367584 ECH
Mepo3g04209 3 51130408 51130782 Mepo1g03904 1 45365078 45367584 PCT