Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03899 ATGACAAAGCTATTCTTATCACAACTTCGTCTTCTTCAATTCCACCCAATGAAACTCCACTCTCTCTCCCTCTTCAAACTCTCTCACATCCCTCTCCGCAACGCTCCCTTTCATCCTCGCTCCTTTTCTGTCCGTCCTGACAGAATTAGGGCTTCTAAAAGCCTCGTCGACGACGAGGCTGAGCTTAGTAATTGGGTTGATGATTTGCGTACTGGACGTGCCGAGACATTGAAACCTGCCCAGAGGGTAGATTCCAGAGAACCCGCTGTCAGAGACGGCGGGTTCCGGAAGAGTAGTATTACTAGAGATGGTTCTTCATTGAGGCAGAGAAGAGGTGGTGGTGATTTTAAGAAGGGGAAACCTAATTTGAATGCAAAAGGAAGGTTTGGATTGAGTAGTGATAGTGATAATGATGAAGTTGTTGAAAGAGGGAAGTTTAAGGGTGGTGGTGGTTCTGGAAGTATTGGTGAGTTTCTTAGTGAAGATGATGTTGATGAAGAAGAGACTAGTGATGAGGATATTGATGATGAGGATGAGGAGATAGTTAAGAAGAGTAGAAGTGTTTTGTTTGGTAAACAAAATGGGGTTTCAACTACTACTAGACCTGCTTCATCTGGTGGAAGTGATTCTTATTTAAGTGATTCCAGATTCGATCAGTGTTCGGTTTCTCCCCTGTCATTAAAAGGAGTCAAAGATGCTGGATATGAGAAAATGACTGTTGTACAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTCCACCAAGTGATCGTGATCAAAGGCGTCCGCCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCGGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCCTTGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCGTTAGAACAGAAACGAATCCAAGCAAATCCTTGCCAGATCCTCGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAGGCCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACAATTCCAGACGAGGTGCGTCAAGTCTGTCATATTGCTCTGAAAAGGGATTTTGAATATATTAATACAGTTCAGGAGGGCTCTGAGGATACACATTCACAGGTCCGTCAAATGCATTTAGTTGCACCGTTAGACAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTAATCTTCTCGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCCGATGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCTGATGTATCTGCACGTGGAGTTGATTATCCGGATGTTACTCTTGTTGTACAGGTTGGCCTTCCAGCTGATAAACAACAGTATATACATCGACTAGGTAGAACGGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTACTTTTTAGCTACAGCAAAAGATTTGCCTATTGTGAAAGCTCCAGTACCGTTAGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCTCTATCGAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAGTTGGGAAAGATAAGTATAGGTTAGTGGAGCTTGCAAATGAGTTTAGTCGATGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAACTTGTCCTTGGCAAGATGGGTCTTAAAAATGTCCCTGGATTACGTTCCAAATAG 2052 0.4303 MTKLFLSQLRLLQFHPMKLHSLSLFKLSHIPLRNAPFHPRSFSVRPDRIRASKSLVDDEAELSNWVDDLRTGRAETLKPAQRVDSREPAVRDGGFRKSSITRDGSSLRQRRGGGDFKKGKPNLNAKGRFGLSSDSDNDEVVERGKFKGGGGSGSIGEFLSEDDVDEEETSDEDIDDEDEEIVKKSRSVLFGKQNGVSTTTRPASSGGSDSYLSDSRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPSDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRIQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHIALKRDFEYINTVQEGSEDTHSQVRQMHLVAPLDKHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVANLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADKQQYIHRLGRTGRKGKEGQGILLLAPWEEYFLATAKDLPIVKAPVPLVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDNPPAIPKLVLGKMGLKNVPGLRSK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03899 683 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 624 IPR001650 -
Mepo1g03899 683 Pfam DEAD/DEAH box helicase 240 417 IPR011545 GO:0003676|GO:0005524
Mepo1g03899 683 MobiDBLite consensus disorder prediction 79 178 - -
Mepo1g03899 683 PANTHER RNA HELICASE 178 612 - -
Mepo1g03899 683 SMART helicmild6 487 568 IPR001650 -
Mepo1g03899 683 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 215 243 IPR014014 GO:0003724
Mepo1g03899 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 585 IPR027417 -
Mepo1g03899 683 Gene3D - 177 430 IPR027417 -
Mepo1g03899 683 Pfam Helicase conserved C-terminal domain 463 568 IPR001650 -
Mepo1g03899 683 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 246 429 IPR014001 -
Mepo1g03899 683 MobiDBLite consensus disorder prediction 79 98 - -
Mepo1g03899 683 CDD DEADc_MSS116 222 431 - -
Mepo1g03899 683 SMART ultradead3 234 447 IPR014001 -
Mepo1g03899 683 Gene3D - 439 661 IPR027417 -
Mepo1g03899 683 MobiDBLite consensus disorder prediction 159 178 - -
Mepo1g03899 683 CDD SF2_C_DEAD 444 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03899 Mepo-Chr1 45301530 45307734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03899 215 593 Eukaryotic Initiation Factors Gene Family AT3G19760 26.835 1.23e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03899 - - gmx:100795739 941.028