Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03898 ATGAGCCCTGCTGCTGTCCAGAGTGCGGCTGCCGAGAAGCACGGTAGGTCCAGGTCACGGAAGAAGAAGAATAACGTTAACACTTCTTCTTCTTCTCCTTCATTGGGGAAGAAAAGAAAAAGTGATGATGATGATTTGAGAATGGAAAAACCTAATAAGAAATCAAAAGGAAAGGTTCAATTGAGTAATGATAATGAAGTGATAGCAGCAGAAGTAGGAAATTTGAAAGTTGGTTCTGGAATTGCTGGTGTAACTGCTTCTTATTTAAGTGATTCAAGATTTGACAAGTGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCGGGATATGAGAAAATGACTATTGTGCAGGAAGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACCGGCACGGGAAAAACAGTGGCCTTTTTGCTTCCATCAATAGAAGTTGTTGTGAAGTCTCCACCAAATAATCGTGGTCAAAATCAAACACCAATTCTTGTTCTTGTTGTATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTTAAGTATCATCCCACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAGTCTTAGTTCAGAACAGAAACGCATTCAAAAAAATCCTTGCCAGATCCTTATTGCTACTCCTGGAAGGCTTAAAGATCATATTGCTAATACTGCTGGTTTTGCATCTAAGCTTATGGGGGTGAAGGCCTTGGTGCTTGATGAAGCTGATCAGTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATCGCTTCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGCGGTGCATCAAGTCTGTAATGTTGCTTTGAAAAAGGATTTTGAATTTATTAATACAGTTCAGGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAATAGCCCCACTAGACAAACATTTCTCTTTACTCTCTGTTATTCTGAAGGAGCACATTGCTGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGCCTTGTTGCTAATCTCCTTGGGAAGTTGAATTTGAATGTGAGAGAAATCCATTCAAGAAAGAATCAGAGTTATAGAACTAGAGTTTCTGACGAATTCCGGAAGTCAAAGAGGCTCATCCTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCCGATGTTTCTCTTGTTGTACAGGTTGGCCTTCCGGCTGATAAACAACAGTATATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGGAAGGGCATACTGCTACTAGCTCCGTGGGAAGAGTTCTTTTTAGATTCCACAAAAGATTTACCTATTGAGAAAGCTCCAGTACCTTCGGTTGATCCCGACACTAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATAGAGAGTAAAGCAAAAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAATTGGGAAAGATAAGAAGAAATTAGTGGAGCTTGCAAACGAGTTCAGTCGATGCATGGGACTTGATACTCCTCCAGCTGTTTCTGGGCTTGTCCTTCGCAAGATGGGTCTTCAAAATGTCGCTGGTTTACGTTCCAAATAG 1683 0.4165 MSPAAVQSAAAEKHGRSRSRKKKNNVNTSSSSPSLGKKRKSDDDDLRMEKPNKKSKGKVQLSNDNEVIAAEVGNLKVGSGIAGVTASYLSDSRFDKCSVSPLSLKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNNRGQNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNPCQILIATPGRLKDHIANTAGFASKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQRQTLMFSATIPDAVHQVCNVALKKDFEFINTVQEGTEETHSQVRQMHLIAPLDKHFSLLSVILKEHIADDVDYKVLVFCTTAMVTSLVANLLGKLNLNVREIHSRKNQSYRTRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVVQVGLPADKQQYIHRLGRTGRKGKEGKGILLLAPWEEFFLDSTKDLPIEKAPVPSVDPDTKKKVERALSNVEIESKAKAYQAWLGYYNSNKKIGKDKKKLVELANEFSRCMGLDTPPAVSGLVLRKMGLQNVAGLRSK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03898 560 CDD SF2_C_DEAD 321 454 - -
Mepo1g03898 560 CDD DEADc_MSS116 99 308 - -
Mepo1g03898 560 SMART ultradead3 111 321 IPR014001 -
Mepo1g03898 560 PANTHER RNA HELICASE 28 500 - -
Mepo1g03898 560 Gene3D - 21 307 IPR027417 -
Mepo1g03898 560 SMART helicmild6 364 445 IPR001650 -
Mepo1g03898 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 487 IPR001650 -
Mepo1g03898 560 Gene3D - 315 537 IPR027417 -
Mepo1g03898 560 MobiDBLite consensus disorder prediction 36 60 - -
Mepo1g03898 560 Pfam DEAD/DEAH box helicase 118 294 IPR011545 GO:0003676|GO:0005524
Mepo1g03898 560 Pfam Helicase conserved C-terminal domain 344 445 IPR001650 -
Mepo1g03898 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 306 IPR014001 -
Mepo1g03898 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 460 IPR027417 -
Mepo1g03898 560 MobiDBLite consensus disorder prediction 1 62 - -
Mepo1g03898 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 92 120 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03898 Mepo-Chr1 45294085 45299365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03898 92 473 Eukaryotic Initiation Factors Gene Family AT3G19760 27.877 1.20e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03898 - - mof:131166847 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03898 1 45294085 45299365 Mepo1g03898 1 45294085 45299365 ECH