Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03897 ATGCAGTCCTCCGCAGCCGAGACCATGAACCCTGCTGCTGTCCAGAGTGCGGCTGCCGAGAAGAAAAGAAAAGGTGATGATGATTTGAGAATGGAAAAACCTAATAAGAAATCAAAAGGAAAGGTTCAATTGAGTAATGATAATGAAGTGATAGGAGACGCAGCAGCAGAAAATTTGACGGTTGCTGGTGGTGGTGATGTTGCTTCTGGAAAGGTTGGTGTAAATGCTTCTTTCTTAAGTGATTCAAGATTCGACGAGTGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCGGGATATGAGAAAATGACTATTGTGCAGGAGGCAACACTTCCAGTAATTCTAGAAGGTAAGGATGTCCTGGCCAAAGCTAAAACAGGCACGGGAAAAACAGTAGCTTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTCCACCAAGTGATCCTGGTCAAAATCAAACACCAATTCTTGTTCTTGTTGTATGCCCAACTCGAGAGCTTGCACGTCAAGTTGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAAAATTGGTTCAGAACAGAAACGCATTCAAAATAATCCTTGCCAGATCCTTATTGCTACTCCTGGAAGGCTTAAAGATCATATTGCTAATACTGCTGGTTTTGCATCTAAGCTTATGGGGGTGAAGGCCTTGGTGATTGATGAAGCTGATCAGTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATCGCTTCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGAAAGAGGTGCATCAAGTCTGTAATGTTGCTTTGAAAAAGGATTATGAATTTATTAATACAGTTCAGAAGGGTACAGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAATTGCCCCACTAGACAAACATTTCACTTTACTCTCTGTTATTCTGAAGGAGCACATTGCTGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACAGCTATGGTCACAAGCCTTGTTGCTAATCTCCTTGGGAAGTTGGATTTCAATGTGAGAGAAATCTATTCAAGAAAGCGACAGGGTTGTAGAAATAGAGTTTCTGACGAATTCCGGAAGTCAAAGAGGCTCATACTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTGTACAGCTTGGCATTCCGGCTGATAAACAACAGTATATACATCGACTAGGTAGAACGGGGCGAATAGGAAAAGAAGGGAAGGGCATACTGCTACTAGCTCCGTGGGAAGAGTTCTTTTTAGCTTCCACAAAAGATTTACCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCCGACACTGAGAAAAAGGTGGAAATGGCTCTATCCAATGTGAAGATGTGGTGTAAAAAACCTGCATATAAGTCATTGCTTGGTTACTACAGTACTCACAAGAAATTTGGGAAAGTTAAGGAGAAATTTGGGGAGCTTGCAAACGAGTTCAGTCGATACATGGGACTTGATAGTCCTCCAGCTGTTTCTAGGCTTTTGCTTAGCAAGATTGGTCTTGAAAATATCCCTGGTTTATGTTCCAAATAG 1653 0.4168 MQSSAAETMNPAAVQSAAAEKKRKGDDDLRMEKPNKKSKGKVQLSNDNEVIGDAAAENLTVAGGGDVASGKVGVNASFLSDSRFDECSVSPLSLKGVKDAGYEKMTIVQEATLPVILEGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPSDPGQNQTPILVLVVCPTRELARQVAAEATKLLKYHPTIGAQVVIGGTKIGSEQKRIQNNPCQILIATPGRLKDHIANTAGFASKLMGVKALVIDEADQLLDMGFRKDIEKIIASVPKQRQTLMFSATIPKEVHQVCNVALKKDYEFINTVQKGTEETHSQVRQMHLIAPLDKHFTLLSVILKEHIADDVDYKVLVFCTTAMVTSLVANLLGKLDFNVREIYSRKRQGCRNRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVVQLGIPADKQQYIHRLGRTGRIGKEGKGILLLAPWEEFFLASTKDLPIEKAPVPSVDPDTEKKVEMALSNVKMWCKKPAYKSLLGYYSTHKKFGKVKEKFGELANEFSRYMGLDSPPAVSRLLLSKIGLENIPGLCSK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03897 550 Pfam DEAD/DEAH box helicase 108 284 IPR011545 GO:0003676|GO:0005524
Mepo1g03897 550 Gene3D - 305 529 IPR027417 -
Mepo1g03897 550 SMART helicmild6 354 435 IPR001650 -
Mepo1g03897 550 Pfam Helicase conserved C-terminal domain 334 435 IPR001650 -
Mepo1g03897 550 MobiDBLite consensus disorder prediction 19 43 - -
Mepo1g03897 550 SMART ultradead3 101 311 IPR014001 -
Mepo1g03897 550 MobiDBLite consensus disorder prediction 1 46 - -
Mepo1g03897 550 CDD SF2_C_DEAD 311 444 - -
Mepo1g03897 550 PANTHER RNA HELICASE 40 477 - -
Mepo1g03897 550 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Mepo1g03897 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 450 IPR027417 -
Mepo1g03897 550 CDD DEADc_MSS116 89 298 - -
Mepo1g03897 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 477 IPR001650 -
Mepo1g03897 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 296 IPR014001 -
Mepo1g03897 550 Gene3D - 32 297 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03897 Mepo-Chr1 45287962 45292878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03897 82 463 Eukaryotic Initiation Factors Gene Family AT3G19760 27.806 4.81e-46 165