Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03878 ATGGAATCCGTATTCTCCAGCATTCTCATCATTCTCGCCATTCTCTTCATCACCTTCATCCTTTCACTCTTGCTCCGTTTCATTCATCTCCGCATCAATCACCTTCGTCTTCTCTCCAATTCAACACCACCAGCTTCAGTAATCATCGACTCACTCCCTCCGATTCCGTTGAATTTCACCTCCGATTCAACACCAACGCCGTCGCAACCACCTCCACCGGCGCCGGAAATACAACGATCAATCGACTCACTTCCAACGTTTCATTTTTCCTCCATTTCCACCACCGCTACCGCCGCTGACTGCGCAGTCTGCCTCACCACGTTCACCAACACCGACCTCCTCCGCGCTCTTCCTCGGTGTTGTCACGCCTTTCACTCCGAATGTATAGACAATTGGCTCTGTTCTTCCAACCTCTCATGCTGTCCCCTCTGCCGTTCCACCATTTTCGCTTCAGAATCCGACCTCGCCGCGATTCTCCGATCACCTTCCGATAGCTTCCGAGTTGAAATTGGAAATGTGAGCCGGCGAGAAAGCAATCCCGAAGCCGCTGCCGTTGCCGGAGACGCATTGTCATCGTATTCCATTGGAGGATCATTCGATTATCGTGTAGTGGAGGTATCGCAGGTTCCGGTGAGTGCAGTTTCGTCATTTCGTGGTTCTGGAAGGTTCTTCGGTGGAAGTAGTCGCAGAATCGAAGCTAACGGAATTGGTGAGGAGATTACCGAAATGTTTCGTTGGATTTCAGGGGATTATTAG 756 0.5079 MESVFSSILIILAILFITFILSLLLRFIHLRINHLRLLSNSTPPASVIIDSLPPIPLNFTSDSTPTPSQPPPPAPEIQRSIDSLPTFHFSSISTTATAADCAVCLTTFTNTDLLRALPRCCHAFHSECIDNWLCSSNLSCCPLCRSTIFASESDLAAILRSPSDSFRVEIGNVSRRESNPEAAAVAGDALSSYSIGGSFDYRVVEVSQVPVSAVSSFRGSGRFFGGSSRRIEANGIGEEITEMFRWISGDY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03878 251 SMART ring_2 101 144 IPR001841 -
Mepo1g03878 251 Pfam RING-like zinc finger 100 129 IPR001841 -
Mepo1g03878 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 154 IPR013083 -
Mepo1g03878 251 ProSiteProfiles Zinc finger RING-type profile. 101 145 IPR001841 -
Mepo1g03878 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 213 - -
Mepo1g03878 251 SUPERFAMILY RING/U-box 83 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03878 Mepo-Chr1 45097924 45098679 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03878 7 152 C3H Transcription Factor Family AT4G28890 32.877 5.03e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03878 K10663 - gmx:100776516 136.732