Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03875 ATGACAGCAAATAGTGGGAGAGGAACTGAAGAGCATAAGAGGAAAATCAATGACCCTTTGCCAAGGTCACCTAGATTATGCACACCTATTAGGAAGGAAAATGTGATTGGTAATGAGAATAATATTTTGACTAGAAATTTTGCTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAAAGTTACATGTTAGGAATAATAAGAACTTGAATGTAGCTTTAGGTATCCCTCCACATAATATTAGACAATATCAGAAGAATCAATTAGGTATTGAGTCTAAGTATAATAATAGCTTGAGTATAGAAATTGCACAGAAATCACTCAGATTAAGCAAAGGACGAAAGGGAATTGATTCTAAAAGGAACTTGAATCATGAACAACATAAAGCTTTTGCTAATATAGGCAATATGGATAATACACATTTTGTTAGCAGTAAAATGCAAAGTACTTCAGCTACATCTAGTTATCCTCAACTGTTAGGAGAGAAAACAGTGAAGGGAAAAGGAATTCTTCACAAAGATTTAGACAATGTGATGTCTGGCGCAGAATGTTTTAACGATGGACTCAACTTAAGAGCGTGGATGAAGTCTGAAAGTCATAAAGTGAAGAAATCAGAAAGGCTGTATATATTTAAACAGATTTTGGAATTGGTTGATTTTGCACAATCTCAAGGGTTTGTCTTGGAAGACATAAAACCATCTTGTTTCGTCTTATCGCCTTTGAATAAAATTAAATACATTGGTTCATATAGCCAACATGTGTTTGATGACCAAAAATCATGTTTCACCTTATTTAAGTCATGCCTTAAGGCTATCATGACCTGCAATGGAACAAGGAAAATGCCTTGGGAACAAGATACCTGTGCATGCCAAAATTTGAGTGCAAAGAAGCAAAAGCTATGTGAAGAGACAACATCTTTGAAGGAGCAGCATCACTTCAACTGTATTCATGGCTGTGACACAAAAATGGACATGGAATCAAGGGTTAATAAAGAAAGGTTGTGGCTTGACGGTTCGAGCTATCAACATGCTTTCGCAGAAGAAAAACAGTTTATTTCTGAAATAATTCAGTTTGAAGAGAAGTGGTATTCTTGTCCAGAAGTGCTCAATGAGGAAACTTGTACATTTTCATCAAATGTTTATAGCCTTGGAGTTCTTCTATTTGAGTTGCTGTGCAATATTGAGTCGTTGGAAGCACATTCAACTGTGATGTTTGATATGCGTCATAGAATCTTACCGCCAAAATTTCTATCACAAAATGCAAAGGACGCTGGTTTTTGTCTATGGCTTCTACACCCTGAACCGTCTTCTCGTCCCAATACCAGGATGATTTTAGAATCTGAATTTATACGCGAATTAGAGGCATCAAATTCTGGTGATAATAATGTTATAGTATCTGAAGATGATGTAGTTGACACACAGGAATTACTGCATTTTCTAATTTCAGTTGAAGAAGAAAAGAAAAAACAGGAAGCTAAATTGGCAGAAGAGCTACATTGTTTGAACGAAGATATTAAGGAGGTAGAAAGAAATCATTCGTATGGAAGTGATTCAGCATTTCTATCGTCACAATTGAACTATCTACCATATCATGATTCTTCCAGTAAAACTATTGGTAGATCTTTTCCAAGTTCATTTGTTGATGAAGCAAAGTTTATGAATAACATAAGTCAGCTAGAGAATAGTTACTTCTCCATGAGATTCCAAGGCCCGCTCAAGGAAGCTGCAGCCGCCAAAAGCAGTGATAAAAGTGTGATGGAAACCAGATGGAGATTGCCTCATTTAGAAAATGTTGGTAATGGGCCAAAGAGAATTCAAGGTTCTATTGGTTGTCTAGGACCTTTCTATGAAGGTATATGCAAATTCGCTCGTTACAGCAAGTTTGAAGAGCGCGGAACATTGAGAAACAGTGATCTTCTTAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGACCGCGATGAAGACTACATTGCAGCAGGTGGAATTTCAAAGAAAATAAAGATATTTGACCTCAATGCTATTTCAAGTGATTCTACAGACATTCAGTACCCCGTTGTCGAGATGTCAAACAAATCAAAGCTCAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTGGCATCTACTGATTATGATGGCGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCACTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCGGCGTCCGACCCAAAAATGTTTGCCAGTGGAAGTGATGATTGTTCTGTCAAACTATGGAATATCAGCGAGAGAAATTCTATAGGAACCATAATGAGTCCGGCAAATGTATGTTGTGTTCAGTTCTCTGAGTACTCCACAAACCTTTTATTTTTTGGATCGGCTGATTACAAGGTGTACGGTTATGATCTTCGTAACACCAAAATCCCTTGGTGTACGTTACCTGGTCATGGAAAAGCTGTTAGCTATGTAAAGTTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGTTATGGGACTTGAAGAAAACTAGCTCAGCCGAGTTGTCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGGAAAGAATTTCGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTTTACTGTTATCACAAATCTCTACCAGTGCCAATGGCTTCTCACAAATTCGAGTCAATCGATCCCATATCTGGTCATTCAAATAGTAGTGATAACAATGGACAGTTTGTTTCTAGTGTCTGCTGGAGGAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTACTTCAGATGGTGTGA 2907 0.3781 MTANSGRGTEEHKRKINDPLPRSPRLCTPIRKENVIGNENNILTRNFASLAGSGPPSTSFCSTTDPKHIVEKLHVRNNKNLNVALGIPPHNIRQYQKNQLGIESKYNNSLSIEIAQKSLRLSKGRKGIDSKRNLNHEQHKAFANIGNMDNTHFVSSKMQSTSATSSYPQLLGEKTVKGKGILHKDLDNVMSGAECFNDGLNLRAWMKSESHKVKKSERLYIFKQILELVDFAQSQGFVLEDIKPSCFVLSPLNKIKYIGSYSQHVFDDQKSCFTLFKSCLKAIMTCNGTRKMPWEQDTCACQNLSAKKQKLCEETTSLKEQHHFNCIHGCDTKMDMESRVNKERLWLDGSSYQHAFAEEKQFISEIIQFEEKWYSCPEVLNEETCTFSSNVYSLGVLLFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKDAGFCLWLLHPEPSSRPNTRMILESEFIRELEASNSGDNNVIVSEDDVVDTQELLHFLISVEEEKKKQEAKLAEELHCLNEDIKEVERNHSYGSDSAFLSSQLNYLPYHDSSSKTIGRSFPSSFVDEAKFMNNISQLENSYFSMRFQGPLKEAAAAKSSDKSVMETRWRLPHLENVGNGPKRIQGSIGCLGPFYEGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAISSDSTDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSASDPKMFASGSDDCSVKLWNISERNSIGTIMSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLPGHGKAVSYVKFIDAQTVVSASTDNSLKLWDLKKTSSAELSSDACDLTFRGHSNGKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPMASHKFESIDPISGHSNSSDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03875 968 PRINTS G protein beta WD-40 repeat signature 846 860 IPR020472 -
Mepo1g03875 968 PRINTS G protein beta WD-40 repeat signature 719 733 IPR020472 -
Mepo1g03875 968 PRINTS G protein beta WD-40 repeat signature 762 776 IPR020472 -
Mepo1g03875 968 Gene3D Transferase(Phosphotransferase) domain 1 198 474 - -
Mepo1g03875 968 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 828 861 - -
Mepo1g03875 968 SMART WD40_4 693 732 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 870 909 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 778 817 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 821 859 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 647 682 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 920 966 IPR001680 GO:0005515
Mepo1g03875 968 SMART WD40_4 735 775 IPR001680 GO:0005515
Mepo1g03875 968 MobiDBLite consensus disorder prediction 1 27 - -
Mepo1g03875 968 ProSiteProfiles Trp-Asp (WD) repeats profile. 742 784 IPR001680 GO:0005515
Mepo1g03875 968 SMART serkin_6 95 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g03875 968 SUPERFAMILY WD40 repeat-like 655 965 IPR036322 GO:0005515
Mepo1g03875 968 ProSiteProfiles Trp-Asp (WD) repeats profile. 828 868 IPR001680 GO:0005515
Mepo1g03875 968 ProSitePatterns Trp-Asp (WD) repeats signature. 846 860 IPR019775 -
Mepo1g03875 968 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 742 777 - -
Mepo1g03875 968 ProSiteProfiles Protein kinase domain profile. 45 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g03875 968 PANTHER PROTEIN SPA1-RELATED 2 44 968 IPR044630 GO:0009640
Mepo1g03875 968 SUPERFAMILY Protein kinase-like (PK-like) 199 465 IPR011009 -
Mepo1g03875 968 Gene3D - 627 968 IPR015943 GO:0005515
Mepo1g03875 968 Coils Coil 301 321 - -
Mepo1g03875 968 Pfam WD domain, G-beta repeat 827 859 IPR001680 GO:0005515
Mepo1g03875 968 Pfam WD domain, G-beta repeat 736 775 IPR001680 GO:0005515
Mepo1g03875 968 Coils Coil 495 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03875 Mepo-Chr1 45078356 45083742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03875 739 923 Miscellaneous Gene Families AT5G08390 25.668 6.65e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Mepo1g03875 WD40 0.0047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03875 K16240 - gmx:100802144 1231.08