Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03822 ATGTCTTCCTCAACCCCTTTTTCTCCACCACCACAAATCCCTTACCTCACCAACCTTGGCTTTGGCTACTCCATAGCCATAGCTCTTGGCTTCCTCTTCCTCCTTTCAACTCTCATCCTTTCATCTTACCTCTGTTGCCGCACTTTCCGCAACCGTAACAACCACCTGAATGGCAACAATCAGCTAAACCATAACCATGACGGTGTAGTTTTACCGCGGGTTATTTTTGTAGCAGAAGACGAAGAAGATCGTGAAGATGTTGTTATGGGTTTGGACCAAAACGTGATAAATTCTTATCCGAGGTTACAATATTGTAAAGATTTGGGACATGACAGCACGTGTTCGATCTGTTTGTGTGAGTACAAGGATTCGGAGATGTTAAGGATGATGCCGGAATGTAGACACTATTTTCACCTATGTTGTCTTGATTCGTGGTTGAAACTTAACGGTTCTTGTCCCGTTTGTCGGAACTCACCTATGCCAACGCCGTTATCTACTCCGTTACAAGAAGTTGTTCCACTTTCTCATTACATTGGTGAAAGGAGGACTAGGAGGTAG 558 0.4409 MSSSTPFSPPPQIPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRNNHLNGNNQLNHNHDGVVLPRVIFVAEDEEDREDVVMGLDQNVINSYPRLQYCKDLGHDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRTRR 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03822 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Mepo1g03822 185 Pfam Ring finger domain 113 156 IPR001841 -
Mepo1g03822 185 PANTHER RING-H2 FINGER PROTEIN ATL67 12 184 IPR044289 GO:0016567|GO:0016740
Mepo1g03822 185 SUPERFAMILY RING/U-box 96 161 - -
Mepo1g03822 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 161 IPR013083 -
Mepo1g03822 185 SMART ring_2 114 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03822 Mepo-Chr1 44439447 44440406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03822 5 178 C3H Transcription Factor Family AT5G07040 37.640 1.48e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03822 - - vra:106773185 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03822 1 44439447 44440406 Mepo1g03822 1 44439447 44440406 ECH
Mepo3g02218 3 31884337 31885315 Mepo1g03822 1 44439447 44440406 PCT