Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03796 ATGGATGTAAAAGTGGCAAGGAGTAGTAGAACTGAACAAGTCATTGGGAAAACATGTGCTTATTGGCTCGCTGGGAAATGCAACAGAAATCCTTGTAGGTTTCTTCATAGTGTAGCACCATCCACTGCTTCTTGTAATGCTGCCAACGCTGGATATCATAATGCTGCACAGAAGCGGCATTTCCCATCGCACGGTGAAACATCATCATACCCGTCTTCTTGCAGAGCTGATGCTGGATATTATAATGCTGCAAAGAAGCACCATTCATCGTATGTGTATGAGAAGCCCCTTCCCAAACATAACACGAAGGCTGCATCATATGTGTATGAGAAGCCCCTTCCCAAACATAATGCGAAGACAGTCTTGAATAGAAAGATTGGAGATAACAGAGACACGACTCAAGTCGTTGAGGCTTCCCTTTCCAAACATAATACGAAGACTGTCTTGAATAGAAAGACTGGAGATAACAAAGCAAGCACAGAAGTTGCTGAGGCTTCCCTTCCCAAACATAATACTGAACCGGTCTTGAATAGAAAGATTGGAGATGACAGAGATGGGACAGAAGTAGATGAAGTTTCTCAGAAGCCTTCACCGAGAATCTGCAAATACTGGGTGAATGACAGTTGTGTTCATAGTGATCAGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCCTCAATAGCAAAGCTTGAGGGACACAAGAAGCTTATCACTGGAATGACAATTCCAGATGGATCAGACAAACTTTATACTGGTAGCACGGATGGGACACTTCGGACATGGGACTGCCGTACTGGTCAATGTGTTGATGTGACGAATCTGGGCGCTGAAGTTACCTCTTTGATCAGTGAGGGCCCATGGATTTTTGTTGGTATGAAGGACACCGTCAAGGCATGGCATATTTCGACTGCTGCACCTTTTACTCTTGATGGACCTAAGGGACAAGTCCATGCTATGATTGTTGCCAAGGATACTCATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCCGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTTTGTGGCCACACTAAATCTGTTGTTTGCCTAGCTGTTGGGGGCTCCAAGATGCTGTATTCAGGATCCAAGGATCAAACCATTAAGGTTTGGGACCTTGACACATTTGAGTGTACAATGACACTCAATGCACATACAGACGCAGTCACCTCCCTTATTTGTTGGGACAAGTTCTTGTTATCCGGTTCATCTGACTGTACCATCAAGGTCTGGTATCAAAACGAAGCAGGGACTTTGGAAGTGGCATATTCACACAATGTGGAAAATGGTGTTGTTACACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATAATATTCTGCTCAGCCGGAGACAATTCAGTTCACCTCTATGAACTGCCATCATTTGCAGAGAGGGGTAGACTGTTTGCAAAGGAAGAAGTTGGATTAGTTGATATAGCCCCAGGCGGTCTCTTCTTCACTGGAGAAAGATCTGGTTTGCTGACAGTCTGGAAATGGTTGGAAGAATACAAGGTTGTGGCATCCTCTTGA 1587 0.4442 MDVKVARSSRTEQVIGKTCAYWLAGKCNRNPCRFLHSVAPSTASCNAANAGYHNAAQKRHFPSHGETSSYPSSCRADAGYYNAAKKHHSSYVYEKPLPKHNTKAASYVYEKPLPKHNAKTVLNRKIGDNRDTTQVVEASLSKHNTKTVLNRKTGDNKASTEVAEASLPKHNTEPVLNRKIGDDRDGTEVDEVSQKPSPRICKYWVNDSCVHSDQCQNLHSWFYGDGFSSIAKLEGHKKLITGMTIPDGSDKLYTGSTDGTLRTWDCRTGQCVDVTNLGAEVTSLISEGPWIFVGMKDTVKAWHISTAAPFTLDGPKGQVHAMIVAKDTHTLLAGAEDGVISAWRGSSEANSPFKLVASLCGHTKSVVCLAVGGSKMLYSGSKDQTIKVWDLDTFECTMTLNAHTDAVTSLICWDKFLLSGSSDCTIKVWYQNEAGTLEVAYSHNVENGVVTLSGMTDPENKPIIFCSAGDNSVHLYELPSFAERGRLFAKEEVGLVDIAPGGLFFTGERSGLLTVWKWLEEYKVVASS 528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03796 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 429 IPR001680 GO:0005515
Mepo1g03796 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 399 IPR001680 GO:0005515
Mepo1g03796 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 270 - -
Mepo1g03796 528 ProSitePatterns Trp-Asp (WD) repeats signature. 252 266 IPR019775 -
Mepo1g03796 528 ProSiteProfiles Zinc finger C3H1-type profile. 195 222 IPR000571 GO:0046872
Mepo1g03796 528 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Mepo1g03796 528 Gene3D - 217 349 IPR015943 GO:0005515
Mepo1g03796 528 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Mepo1g03796 528 SMART c3hfinal6 15 38 IPR000571 GO:0046872
Mepo1g03796 528 SMART c3hfinal6 195 221 IPR000571 GO:0046872
Mepo1g03796 528 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 393 - -
Mepo1g03796 528 PANTHER - 17 527 IPR044715 -
Mepo1g03796 528 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Mepo1g03796 528 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Mepo1g03796 528 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Mepo1g03796 528 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Mepo1g03796 528 Pfam WD domain, G-beta repeat 395 429 IPR001680 GO:0005515
Mepo1g03796 528 Pfam WD domain, G-beta repeat 230 265 IPR001680 GO:0005515
Mepo1g03796 528 Pfam WD domain, G-beta repeat 354 390 IPR001680 GO:0005515
Mepo1g03796 528 SMART WD40_4 305 344 IPR001680 GO:0005515
Mepo1g03796 528 SMART WD40_4 352 390 IPR001680 GO:0005515
Mepo1g03796 528 SMART WD40_4 226 265 IPR001680 GO:0005515
Mepo1g03796 528 SMART WD40_4 393 430 IPR001680 GO:0005515
Mepo1g03796 528 Gene3D - 350 527 IPR015943 GO:0005515
Mepo1g03796 528 SUPERFAMILY WD40 repeat-like 226 481 IPR036322 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mepo1g03796 Mepo-Chr1 44201615 44205120 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03796 221 441 Eukaryotic Initiation Factors Gene Family AT2G46290 25.620 6.47e-10 58.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03796 - - mtr:25500966 642.884