Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03712 ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCATGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAAATATACCATACCATAAAAGCTGCTTCAAATGTAGTCATTGCAAGGGAAATCTTACGATGAGTACATACTCCTCCATGGATGGAATTCTCTATTGCAAAACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTGCAAAGTCTTCTGACAAAGCAAATGAGCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGTACCCTGGACAAATGTGCAACTTGCTCTAAAACCGTCTATCCACTGGAAAAGGTGACACTGGAAGGAGAAATCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCTCTTGATGGTGTCCTATACTGCAGGGTTCATTTTGCACAACTTTTCATGGAGAAAGGTAACTACAGTCATGTACTCAAATCTGCACACAAGAGGAATAGTTCTTCTTCTGAATCAGTTGAAGTTGTTCAAGAGCCTTCACAATCAGCAGAAGCACCTCAAGATCATCCAGAAGAAACCTCTTGA 618 0.4045 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKANELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGEIYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNSSSSESVEVVQEPSQSAEAPQDHPEETS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03712 205 Pfam LIM domain 104 159 IPR001781 -
Mepo1g03712 205 Pfam LIM domain 10 65 IPR001781 -
Mepo1g03712 205 FunFam LIM domain and actin-binding 1 98 168 - -
Mepo1g03712 205 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mepo1g03712 205 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mepo1g03712 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Mepo1g03712 205 FunFam LIM domain and actin-binding 1 4 74 - -
Mepo1g03712 205 MobiDBLite consensus disorder prediction 173 199 - -
Mepo1g03712 205 Gene3D Cysteine Rich Protein 5 72 - -
Mepo1g03712 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mepo1g03712 205 PANTHER OS06G0237300 PROTEIN 6 83 - -
Mepo1g03712 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mepo1g03712 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Mepo1g03712 205 SMART lim_4 9 61 IPR001781 -
Mepo1g03712 205 SMART lim_4 103 155 IPR001781 -
Mepo1g03712 205 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Mepo1g03712 205 Gene3D Cysteine Rich Protein 100 168 - -
Mepo1g03712 205 MobiDBLite consensus disorder prediction 173 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03712 Mepo-Chr1 43365083 43367108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mepo1g03712 LIM 1.2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03712 - K09377 gmx:100305845 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03712 1 43365083 43367108 Mepo1g03712 1 43365083 43367108 ECH
Mepo3g02114 3 30569304 30571063 Mepo1g03712 1 43365083 43367108 PCT