Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03612 ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAAAAGGCCTTTGAATTATCAGTTTTATGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCAAGCTCAAGCATTCCAGAAACAATTGAACGATACCGCAGTCATACCCGGATTAATAATACTCCAACGACATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAAAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAGGGTCTAGGGTCTTGTTCCATTGATGAACTACAAAAGATTGAACAACAGTTAGAGAGAAGTATAAGCAAAATTCGAGCAAAAAAGACTCAGGTTTTCAAGGAACAAATTGAGCAGCTAAAGGAAAAGGAAAAAACCCTAGTTGCTGAAAATGTCATGCTCTCAGAGAAGTATGGTAACTATTCATCACAGGAAGCAATGAAGGATCAGAGAGAAAATATAGCTGATGCTGAACCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCCTCCAGAAACAAGAACAAGGCGCATTTCTCCAAAGGTGTAG 675 0.3867 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSIPETIERYRSHTRINNTPTTSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLERSISKIRAKKTQVFKEQIEQLKEKEKTLVAENVMLSEKYGNYSSQEAMKDQRENIADAEPYADQSSPSSDVETELFIGPPETRTRRISPKV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03612 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 Coils Coil 122 145 - -
Mepo1g03612 224 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Mepo1g03612 224 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Mepo1g03612 224 Coils Coil 85 115 - -
Mepo1g03612 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Mepo1g03612 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g03612 224 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g03612 224 Coils Coil 151 171 - -
Mepo1g03612 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 MobiDBLite consensus disorder prediction 176 224 - -
Mepo1g03612 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g03612 224 FunFam MADS-box transcription factor 1 13 87 - -
Mepo1g03612 224 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
Mepo1g03612 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03612 Mepo-Chr1 42016634 42024646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03612 1 159 MADS-box Gene Family AT2G45660 75.155 2.66e-82 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo1g03612 K-box 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03612 - - psat:127075834 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03612 1 42016634 42024646 Mepo1g03612 1 42016634 42024646 ECH
Mepo1g03612 1 42016634 42024646 Mepo1g03610 1 41984619 41989636 ECH