LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g03610	ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATAAACCGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACTATTGAGCGATACCAACGGTGCTCATTTAATCCTCAACAAGATGACCACCAAATTGATTGTGACACACAGCAGAGTTGGTACCAAGAGGTGTCTAAGCTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAAAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAAAAACAGCTTGAAGGTGCCTTAGCACAAGCTAGGCAAAGAAAGACTCAAATTATGATTGAACAATTGGAAGAGCTTCGCAAAAGGGAACGTCATCTAGGAGACTTGAACAAGGAACTAAGGATTAAGCTTGAAGGAGAGGGATTTAATCTTAAAGCAATGGAAAGTTTGTGGAGCTCTAATTCAGTTGCTGGAAATAGCAACTTTACCTTTCAGCCACCTCAAACCAACCCTATGAATATGAGTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTATCAGTATGTTCAAGCTGAGCCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATGCTTTGA	759	0.4058	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQLEELRKRERHLGDLNKELRIKLEGEGFNLKAMESLWSSNSVAGNSNFTFQPPQTNPMNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSKSMACETNFMQGWML	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g03610	252	FunFam	MADS-box transcription factor 1	13	84	-	-
	Mepo1g03610	252	Coils	Coil	122	145	-	-
	Mepo1g03610	252	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Mepo1g03610	252	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mepo1g03610	252	Gene3D	-	13	111	IPR036879	GO:0003677\|GO:0046983
	Mepo1g03610	252	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	196	-	-
	Mepo1g03610	252	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	Coils	Coil	95	115	-	-
	Mepo1g03610	252	Coils	Coil	151	171	-	-
	Mepo1g03610	252	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mepo1g03610	252	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Mepo1g03610	252	Pfam	K-box region	86	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g03610	Mepo-Chr1	41984619	41989636	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g03610	1	252	MADS-box Gene Family	AT2G45650	65.891	1.91e-113	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mepo1g03610		K-box	3.1e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g03610	K09264		-	gmx:100820061	409.068

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo1g03610	1	41984619	41989636	Mepo1g03610	1	41984619	41989636	ECH
	Mepo1g03612	1	42016634	42024646	Mepo1g03610	1	41984619	41989636	ECH