Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03559 ATGGAAGGAAGAGAAGGTATCAATCCTGCAGTTACAGTGATAGCGCCAGAAGCTCCATCAACATATCATGTCGCACCAAGGAGTGAAGTTCCAAACCAGGTTCATAACCCTGAAGTAGCCACAGCTGCAGCAGCAGGAGGTTCTACTGCTGCTCCTGCTGCTGCTACCGTCGGTGTTTCCCCGGTGAGTGTAGGTTTGGATGGAACAGTTAAGAAGAAAAGGGGTAGACCAAGGAAATATGGGCCAGATGGGTCTGTCAACATGCCATTGTCACCATTGCCTATCTCATCTTCGGCTCCGCCTTCTTCTAAAGACTTCTCATCCGTGAAGCAAGTGAAACCACAAGGGATGGAATACAAGAGGGCGAAAAAATTTGTGATGGATCATCTAGGTGAAATGAATGGACACTCTGATGGTACAAACTTTATGCCGCATTTCATCACTGTCAATGCCGGCGAGGATATTACAAATAAGGTGATATCATTTTCACAACAAGGGCCGCGAGCAATATGTGTCTTATCGGCTACTGGAGTGATTTCAAATGTGACACTCCGTCATCCAGATTCTTCTGGGGGTACTTTGACCTATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGATAACCAAGGAACAAGAAGCAGGGCAGGTGGAATGAGTGTCTCACTGGCAAGCCCTGATGGTCGTGTAGTAGGCGGCGGAGTTGCTGGTGTTCTTATAGCTGCCACTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTGCCAAGCGGCCATCTAGATCAGAAAACAAAGAAGCCTAAGTCTGATTATGCAACAGCCACATTTACTCAGGCCATTGCGGTATCTGCAGCACCTCCGCCACCCCAAACTAACAATGCTGAAAAAGAGGATGCCATGGGTGGTGGCGGTGGACATGTACTGCAAAGTTCTGGAACCCTTAACTCAAATTTCACTTCTCCTCCACCCACCGCCTTTCGAAGGGAAAACTGGGTCAACATGCACTCTATGCCGGACACAAGAAAAGCGGCTACTGATATTAACATATCTTTGCCTGATAATTAA 1074 0.4758 MEGREGINPAVTVIAPEAPSTYHVAPRSEVPNQVHNPEVATAAAAGGSTAAPAAATVGVSPVSVGLDGTVKKKRGRPRKYGPDGSVNMPLSPLPISSSAPPSSKDFSSVKQVKPQGMEYKRAKKFVMDHLGEMNGHSDGTNFMPHFITVNAGEDITNKVISFSQQGPRAICVLSATGVISNVTLRHPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRAGGMSVSLASPDGRVVGGGVAGVLIAATPVQVVVGSFLPSGHLDQKTKKPKSDYATATFTQAIAVSAAPPPPQTNNAEKEDAMGGGGGHVLQSSGTLNSNFTSPPPTAFRRENWVNMHSMPDTRKAATDINISLPDN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03559 357 CDD DUF296 144 257 IPR005175 -
Mepo1g03559 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 144 257 IPR005175 -
Mepo1g03559 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 259 - -
Mepo1g03559 357 Gene3D - 144 275 - -
Mepo1g03559 357 MobiDBLite consensus disorder prediction 67 112 - -
Mepo1g03559 357 ProSiteProfiles PPC domain profile profile. 139 280 IPR005175 -
Mepo1g03559 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 318 IPR039605 GO:0003680
Mepo1g03559 357 MobiDBLite consensus disorder prediction 90 110 - -
Mepo1g03559 357 MobiDBLite consensus disorder prediction 287 306 - -
Mepo1g03559 357 FunFam AT-hook motif nuclear-localized protein 1-like 144 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03559 Mepo-Chr1 41322005 41327642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03559 11 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.106 9.06e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03559 - - psat:127075781 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03559 1 41322005 41327642 Mepo1g03559 1 41322005 41327642 ECH
Mepo3g02023 3 29654629 29657511 Mepo1g03559 1 41322005 41327642 PCT