Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03542 ATGACAGATCCTCAATCAAATCTTTTTGATGAATGGTTCAACTTCATGCTCCTCAACCCTCATCATCACCACTCTTCTTCTTCTTCTCATCAAACCAACATGTTTGAAATTCAATCTCATAATCAACCCTCCTCCTCATCCTCCACCATGAATCCTCCTTCTCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAACTAAGCCTCATAAATCATCAACAACAAAATGAACCCTCAAACGTTTTTAATACTCAAACAATAGAAGATGAATTAGAAGACAAGAGAATGGAAAGGCATGGATATAATCATGATGATGATGATGATGTTGATGATGATGAAAGTGTTACTGTTGCACTACAAATAGGGCTTCCTAGTAATTCTTCTTCTGATCTTGGATCAAGGATGGTCTCATCAAATTGCATAGAAATGGCTGAAAAAGAGGAAGTTAATATGATTTCTGAACAACAACCTTTGGATAAATTGAACAACAAAGGCCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCAGATTCTCTAAAAGGATCACAACCAACAGCAATGCTAAGGCTACCATGCTATTGTTGTGCACCAGGTTGCAAGCATAACATTGACCATCCTAGAGCAAAGCCTCTCAAAGATTTTAGAACTCTTCAAACCCATTATAAGAGAAAGCATGGTATAAAACCTTATATGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTGTGTGGCTCAGATTTTAAACATAAAAGATCTCTTAAAGACCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGTAGGGTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 1032 0.374 MTDPQSNLFDEWFNFMLLNPHHHHSSSSSHQTNMFEIQSHNQPSSSSSTMNPPSPPLREALPLINKLSLINHQQQNEPSNVFNTQTIEDELEDKRMERHGYNHDDDDDVDDDESVTVALQIGLPSNSSSDLGSRMVSSNCIEMAEKEEVNMISEQQPLDKLNNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEVGSEIEHDGGSSM 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03542 343 Gene3D Classic Zinc Finger 181 204 - -
Mepo1g03542 343 FunFam zinc finger protein WIP2-like 181 204 - -
Mepo1g03542 343 SMART c2h2final6 266 286 IPR013087 -
Mepo1g03542 343 SMART c2h2final6 182 204 IPR013087 -
Mepo1g03542 343 MobiDBLite consensus disorder prediction 38 59 - -
Mepo1g03542 343 MobiDBLite consensus disorder prediction 38 54 - -
Mepo1g03542 343 PANTHER ZINC FINGER PROTEIN WIP2 20 335 IPR043584 GO:0003700|GO:0010468
Mepo1g03542 343 FunFam Zinc finger protein WIP2 235 317 - -
Mepo1g03542 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Mepo1g03542 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 286 IPR013087 -
Mepo1g03542 343 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Mepo1g03542 343 SUPERFAMILY beta-beta-alpha zinc fingers 252 286 IPR036236 -
Mepo1g03542 343 Gene3D Classic Zinc Finger 244 315 - -
Mepo1g03542 343 Pfam C2H2-type zinc finger 182 201 - -
Mepo1g03542 343 SUPERFAMILY beta-beta-alpha zinc fingers 175 204 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03542 Mepo-Chr1 41166482 41169597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03542 1 336 C2H2 Transcription Factor Family AT3G57670 55.438 1.09e-124 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g03542 zf-C2H2_6 9.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03542 - - gmx:100794446 520.005