Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03535 ATGTATGCAAGCGATGAATTTCGCTTGTTTTCTTTCAAGGTCCTTCGTTGTTCCCATGCACAACCTCATGATTGGACTGAGTGTCTATTTGTGCATCCCGGAGAGAATGCTCGGAGGAGGGACCTTAGGAGGTTCCATCACAGCTGCGTGCCTTGCTCAGAATTTAGGAAAGGGGCTTGTAGGAATGGAGATAAGTGTGAATATGAATATTCTAGTGCTGGCTACACCCATATCAGTATCGAACAAGATGCTGTAAAGAAGGACTACTTGTAA 273 0.4469 MYASDEFRLFSFKVLRCSHAQPHDWTECLFVHPGENARRRDLRRFHHSCVPCSEFRKGACRNGDKCEYEYSSAGYTHISIEQDAVKKDYL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03535 90 Pfam CCCH-type zinc finger 51 69 IPR041367 -
Mepo1g03535 90 ProSiteProfiles Zinc finger C3H1-type profile. 51 73 IPR000571 GO:0046872
Mepo1g03535 90 PANTHER UNKEMPT FAMILY MEMBER 1 68 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03535 Mepo-Chr1 40955317 40955589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03535 1 70 C2H2 Transcription Factor Family AT5G12850 64.286 2.73e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g03535 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03535 - - atri:130826259 125.176