Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03519 ATGGAATTATCGCTTCAGTTGTTACCAGCTAAACGCTCAGCTCCAGATGGAATTTCATCTGAGGAAGGATGCAAAAAACTTAAGTTATCAAGTGATGGTTTGCCATGTTCAGCACAAGCTAAGGTTGTTGATTACAGTAATCCGTATGCAATCACAGAAGTTTTAAATAGTTTAGAGGGTGGAGAATATGGTAGTGTGACAAAGGATATTGATGCCCTTATAACCCGAAAAATGCAAGTATTAGGCCCCTACTTTGCTAAATATCCTACCCTCATTGATCGATTCTTGAAAGTGGTGACAGATCAGGATGAAAAAAGTCACCACTCAGATCAAAATGTCATAGATTTGGATGACAAACAAATTCAAAGGGATGTTGGGGCACCAAAAAGAGAAAAGGATGTTCCTGCGGCACCATGCCCTGTTGTTATAATTGATTCAGATGAGGAGGATGATAGGGATCAGAAGTCTTTTCATGCGTATCATGAAGTTGTTTTGCCAAAACGGCAGTCTCCTGCATTAAAAATGATTGGATATCATCCTCCCAATGCTTACCATGGAGAAAGTTCAGATCTAAAATTTGAAACAATTCTGCCTCCTAATGCATACTATGGAGAAAGTGCGGATCGAAAATCTGAAAAAAAACTGCCCTCTAAAGATAACCCAAGGATAGATAAAGGTGTTTATCTTGGTGTACAAGAGGAAGAAGATAATGCAGTTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCCGCCCGAAGAAGAAGAGGAAGAAGATGCTGACTGTGATCATTCTTTTGTTCTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGATAGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACCAGGACTTATATATCTGATTCTTCGAATACCAAAGAAAAAGTTGATGCCTTTGGAGTGAAGATTGCCGAAGAAGAATTCTTGGCAACTGATATATCAGCCCATCCTCGACATGCAAATCAAATGAAACCGCACCAAGTTGAAGGATTCAACTTTCTTGTCAGAAACTTGGTAGGAGACCATCCCGGGGGATGCATCCTGGCTCATGCTCCAGGATCAGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGAAAGTATCCTAATGCTCGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAGAAAGAGTTTCAAACGTGGCAAGTGGAAGATATACCGCTCTATGATCTATACACTGTGAAGGCTGACAGCAGATCTCAGCAGCTGGAGGTGTTAAAACAATGGATGAATAACAAAAGTATCCTTTTCTTAGGATACAAACAGTTTTCTTCCATTGTGTGTGATAATAGTAATAACAATGCATCAATATCATGCCAAGAGATATTGCTTAAAGTTCCCTCGATTCTCATTTTAGATGAGGGACACACTCCAAGAAATGAGAATACAGATATGGTACAGTCTCTTGCCAAAGTACAAACACCTAGGAAAGTTGTATTGTCTGGAACTCTCTATCAAAATCATGTCAGGGAGGTTTTCAATGTTCTCAATCTTGTGAGGCCGAAGTTTCTAAAGATGGAAACATCTAAGCCTATCGTCCGACGCATTCAGGCTAGGGTCCATATACCTAGCGTGAAACGCTTTGACGATTTGGTTGAGAATACATTACAGAAGGACCCAGATTTTAAAAGGAAAGTTGCTGTAATTCATGATTTGCGTGAGATGACCAGTAAAGTTCTTCACTACTACAAAGGCGATTTTCTTGACGAGCTTCCTGGCCTGGTAGATTTCACTGTGGTGCTCAAACTTACGCCCAGACAGAAGATTGAAGTTGAGAAAGCAAAGAAGATGTATATTAGGAAGTTCAAATTTTCTTCTGTAGGCAGTGCAGTGTATCTGCACCCAAAGTTGAAGCCAATTGCAGAGAAATGTGATGAAAATTCTATATCTGATCATATCATGGATGATTTTATAGCAGACCTTGATATGAGAGATGGAGTCAAATCAAAGTTCTTTCGCAATATGCTGAACCTATGTGAATCAGCTGGGGAAAAACTTCTGGTGTTCAGTCAATATCTATTGCCTTTGAAATATTTGGAAAGGTTAGCCATGAAGTGGAAGGGTTGGAGTCTCGGAAAAGAAATCTTTGTGATTTCAGGAGAATCTTCCGCTGAACAAAGAGAGTTTTCAATGGATAAGTTTAACAATTCACCCGAGGCAAAAATATTTTTTGGCTCAATCAAAGCATGTGGTGAAGGGATTTCATTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTTCATCTCAACCCATCTGTTACTCGTCAAGCTATTGGCCGTGCTTTTCGGCCAGGACAGAAAAAGAAAGTCTTTGTGTATCGTTTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACCATACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACCGCGCATTTGAAGTTGAAACACTTGATGTGAAAGAATGCGGTGATCTATTTCTTGAGAGCCCGTTGTTAGGGGAAGACGTAAAAGCTCTGTATAAAAGGTAA 2673 0.3977 MELSLQLLPAKRSAPDGISSEEGCKKLKLSSDGLPCSAQAKVVDYSNPYAITEVLNSLEGGEYGSVTKDIDALITRKMQVLGPYFAKYPTLIDRFLKVVTDQDEKSHHSDQNVIDLDDKQIQRDVGAPKREKDVPAAPCPVVIIDSDEEDDRDQKSFHAYHEVVLPKRQSPALKMIGYHPPNAYHGESSDLKFETILPPNAYYGESADRKSEKKLPSKDNPRIDKGVYLGVQEEEDNAVDAEDDGLEDIWREMSMAIETSKDVSADPPPEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYISDSSNTKEKVDAFGVKIAEEEFLATDISAHPRHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEVLKQWMNNKSILFLGYKQFSSIVCDNSNNNASISCQEILLKVPSILILDEGHTPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQARVHIPSVKRFDDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQKIEVEKAKKMYIRKFKFSSVGSAVYLHPKLKPIAEKCDENSISDHIMDDFIADLDMRDGVKSKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSAEQREFSMDKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHHTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDLFLESPLLGEDVKALYKR 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03519 890 SMART helicmild6 729 814 IPR001650 -
Mepo1g03519 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 852 IPR027417 -
Mepo1g03519 890 CDD SF2_C_SNF 697 825 - -
Mepo1g03519 890 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 372 551 IPR014001 -
Mepo1g03519 890 MobiDBLite consensus disorder prediction 202 224 - -
Mepo1g03519 890 Pfam SNF2-related domain 378 567 IPR000330 GO:0005524|GO:0140658
Mepo1g03519 890 Pfam Helicase conserved C-terminal domain 705 813 IPR001650 -
Mepo1g03519 890 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 700 868 IPR001650 -
Mepo1g03519 890 MobiDBLite consensus disorder prediction 206 221 - -
Mepo1g03519 890 Gene3D - 325 584 IPR038718 -
Mepo1g03519 890 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 553 IPR027417 -
Mepo1g03519 890 SMART ultradead3 354 564 IPR014001 -
Mepo1g03519 890 Gene3D - 621 877 IPR027417 -
Mepo1g03519 890 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 55 889 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03519 Mepo-Chr1 40800211 40808257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03519 711 842 RAD5 or RAD16-like Gene Family AT5G43530 36.364 1.59e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo1g03519 SNF2_N 2.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03519 K10875 - gmx:100780454 1342.02