Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03494 ATGGCATTAAGTAATCCACTCTTTGATGATGATATACAGAGTAACAGTGCTGTTGATCCTCCTAACAATGAAGAGTCAACAGATGTTGGTGAATTGGTGAATGATCCCGCACAAACTGAGACTATTTTCAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCCTGAATCATATGTACCCACCAATCCATCAGTGTTCAAATGGTCACACTATATGCCCACGCTGCAAACCTAGAGTGCATAACAGATGCCCTACTTGTAGGAATAAGCTGGGAAACATTAGATGTTTAGCATTGGAGAAGGTTGCTGCATCTTTTGCCCTCCCCTGTGAATACATGAGTCTTTGCATTCAAGCTGAAGTACAAGATGAAGTACAAGCTGAAGTACAAGCTGAAATTTCTGAAAATTGGCCAATACAAGCTGATGCAGGGCCATTTGATCAAGCTGGAAGCAAGTACTTGAAAATAGGATTGTTCAGCACATGGAGAACATGA 495 0.4162 MALSNPLFDDDIQSNSAVDPPNNEESTDVGELVNDPAQTETIFSSVRELLECPVCLNHMYPPIHQCSNGHTICPRCKPRVHNRCPTCRNKLGNIRCLALEKVAASFALPCEYMSLCIQAEVQDEVQAEVQAEISENWPIQADAGPFDQAGSKYLKIGLFSTWRT 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03494 164 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 115 - -
Mepo1g03494 164 MobiDBLite consensus disorder prediction 8 30 - -
Mepo1g03494 164 SUPERFAMILY RING/U-box 38 92 - -
Mepo1g03494 164 CDD RING-HC_SIAHs 50 88 - -
Mepo1g03494 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 137 IPR013083 -
Mepo1g03494 164 ProSiteProfiles Zinc finger RING-type profile. 52 88 IPR001841 -
Mepo1g03494 164 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03494 Mepo-Chr1 40524486 40525769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03494 44 118 C3H Transcription Factor Family AT2G41980 69.333 2.95e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03494 K04506 - gmx:100793457 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03494 1 40524486 40525769 Mepo1g03494 1 40524486 40525769 ECH
Mepo5g02732 5 33182704 33186761 Mepo1g03494 1 40524486 40525769 PCT