Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03493 ATGGCATTGAGTAATCCACTCTTTGATGATATACGGAGCAACATTGATGTTGATCCTCCTCAAAAGGAAGAGTCAACAGATGTTGGTGAATTGGTGAACGATCCTGCACAAACTGCTCTTAAACCTACTGGGACTGTTTTAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTGTGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTTGAATGGTCACACTATATGCTCAGATTGCAAACCTAGACTACATAACCGGTGCCCTACTTGTAGGCATGAGCTGGGAAATATTAGATGTCTAGCACTGGAGAAGGTGGCTGCATCTTTTGCACTCCCCTGTAAATTCAAAGATTTTGGGTGCATCGGTATATATCCGTACTACAACAAGCCAGAACATGAATCTCAATGTTCATATAGACCCTATAACTGTCCATATGCTGGTTCAGAATGCTCTGTTGTGGGTGATATAAACTTCCTGGTGACCCATCTGAAAGAAGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCTCAAGATGTTGAAAATGCCACATGGATGTTAACGGTTTTCAGCTGTTTTGGTAAGTACTTTTGTCTACATTTTGAAACTTTTCAACTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTCATAGGTGAAGATAGCGAGGCAAAAAATTATAGCTACAGTCTCGAGGTAGGCGGAAATGGGAGGAAGATGGTTTGGCAAGGAGTGCCAAGAAGCATCAGGGAAAGTCATAGCAAGATCCGTGACAGTTTTGATGGTCTTATTATTCAGAGGAATATGGCGCTTTTCTTTTCAGGCGGTGACCGGAAAGAGTTGAAGCTAAGGGTTACTGGTAGGATTTGGAAAGAACAATGA 915 0.423 MALSNPLFDDIRSNIDVDPPQKEESTDVGELVNDPAQTALKPTGTVLSSVRELLECPVCLNAMYPPIHQCLNGHTICSDCKPRLHNRCPTCRHELGNIRCLALEKVAASFALPCKFKDFGCIGIYPYYNKPEHESQCSYRPYNCPYAGSECSVVGDINFLVTHLKEDHKVDMHNGSTFNHRYVKSNPQDVENATWMLTVFSCFGKYFCLHFETFQLGMAPVYIAFLRFIGEDSEAKNYSYSLEVGGNGRKMVWQGVPRSIRESHSKIRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03493 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 303 - -
Mepo1g03493 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Mepo1g03493 304 SUPERFAMILY TRAF domain-like 112 301 - -
Mepo1g03493 304 SUPERFAMILY RING/U-box 44 95 - -
Mepo1g03493 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 108 IPR013083 -
Mepo1g03493 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Mepo1g03493 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 159 IPR013083 -
Mepo1g03493 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo1g03493 304 CDD RING-HC_SIAHs 54 92 - -
Mepo1g03493 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Mepo1g03493 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Mepo1g03493 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Mepo1g03493 304 MobiDBLite consensus disorder prediction 1 28 - -
Mepo1g03493 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 160 297 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03493 Mepo-Chr1 40510203 40514883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03493 30 304 C3H Transcription Factor Family AT2G41980 68.953 1.70e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03493 K04506 - gmx:100793457 580.867