Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03486 ATGGGTTCTCGTCCACATAAACGTGCGAAACACGAAGACATACCAATCAGAACTCACTACAACCCACTTCCGATGACAGCCCGTGCACATTACGAAGATCTGATGGAGGAAGCAAGAACTTGTATTACTCATGACAACTATAAGGACTTGATACATACGGTGCTGCCCAAACTCCGCAAACTTTGTGTACATTTTGTAGTATACAATCAATCCATTGATGAATTTTCAAGGGATGCTATTCCTAGAGAAACCGAATACCAAGTAATCACAGGATGTACTCACGTTTTTTGCCAGAAGTGCATCAGAAAATGGTTCACCAGAGGAAAAACGTCGTTTGATCTCGTCATGGACCCTACTGCCAAAGACCCTACAAACTGTCCTTATTGTAGAGGTTTACTCACATTAAATGACATGTTCTCTGAAACAAAACCAACTACTAAGTTGGAAATTCTGATGCAACTTCTGAGAGAAGACACCTCTAATAAGTCGAAGTCGGTAATATTTACGCGTTATACTATTACCGTGGTCTTTTTTCTTTTGCATTTGCGACTTGCTGGTTTCAAAACTCTGTCTTATACTGCATATAACCTACATTACTGTGCAACTCATATCAAGGAATTTGAAAACATTGACGGACCAGAAGTCTTGCTTGTAGACTTTGAAACATCCCGCAGACATGGATTTACCATAAATGCTGCATGCAGAGTCTTCCTATTGGATGCATGTAGGAAATCGATTGAGGATGAGTTAGTGGCTCGTGTTACACAACCATTGTGTGTTTTGAGATTGATATCTCAAAACACTATTGAAGATAAAATACTCTCGTTGAAGGAGACGTTTGCTCAAACCGGCACTTTTGATTTCTATGACAAGGAGATCCTACAATACCTTTTGCAAGAAGATTCTATGTGA 912 0.3969 MGSRPHKRAKHEDIPIRTHYNPLPMTARAHYEDLMEEARTCITHDNYKDLIHTVLPKLRKLCVHFVVYNQSIDEFSRDAIPRETEYQVITGCTHVFCQKCIRKWFTRGKTSFDLVMDPTAKDPTNCPYCRGLLTLNDMFSETKPTTKLEILMQLLREDTSNKSKSVIFTRYTITVVFFLLHLRLAGFKTLSYTAYNLHYCATHIKEFENIDGPEVLLVDFETSRRHGFTINAACRVFLLDACRKSIEDELVARVTQPLCVLRLISQNTIEDKILSLKETFAQTGTFDFYDKEILQYLLQEDSM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03486 303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 278 IPR027417 -
Mepo1g03486 303 ProSitePatterns Zinc finger RING-type signature. 92 101 IPR017907 -
Mepo1g03486 303 ProSiteProfiles Zinc finger RING-type profile. 92 130 IPR001841 -
Mepo1g03486 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 133 IPR013083 -
Mepo1g03486 303 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 24 279 - -
Mepo1g03486 303 SUPERFAMILY RING/U-box 86 138 - -
Mepo1g03486 303 Gene3D - 16 302 IPR027417 -
Mepo1g03486 303 Pfam Ring finger domain 85 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03486 Mepo-Chr1 40444764 40446743 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03486 88 278 RAD5 or RAD16-like Gene Family AT5G05130 27.273 7.66e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03486 - - tpra:123893779 331.643