Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03440 ATGCCGTCGGAAGAACTCGAAGCAAACCGCAGAAGCAATCACGAAATGCCTAATACAGAGATGGATAATTCATTTGAAAGTAACGAAAGACCTATTTTCAGTGACATTAGACGCTATTTTTGTCAATACTGTGGGATCTGCAGGTCCAAGAAGACCCTAATTACCTCTCACATCAATTCTCATCATCAAGTAGAAATGGAAAAGGCAGGACTTGAAAGAGATCAAGAAGCACAGGGTACAAAATTGAATACTTGTAGGGAATGTGGTATGAGTTTCAAAAAACCTGCCTACCTATTGCAACACATGCAAAGTCATTCACTTGAGAGGCCGTATATCTGCACTATTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGAATCGTCATATTCTACAACATGAAGGGGAGAAATTTAAATGTCCAATTGAGAATTGCAACCGCGACTTTTCTTTGAAGGGAAACATGACAAGACATGTCAAGGAGTTTCATAACAAGGACTCTTCTACCTCTATCAATGTTAAAATTCAGAAGCAGCACGTGTGCCTTGAAATTGGCTGTGGGAAGGCTTTCAAATTTGCATCAAAGCTAGAGAAGCACAAAGACTCTCATGTTAAGCTGGAATCAATAGAGGTAGTGTGCTTATACCCAGGCTGTATGAAGAGTTTTACGAATCTTCAGTGCCTTAGAGCACACACTAAATCCTGCCACCAGTATGTGAACTGTGAGACTTGTGGGAAAAAGCAACTGCGTAAAAACATTAAAAGACACCTCCGTAAACATGAAACTGGTAGTTCATCAGAGGTGTTTCATTGTGATTATAAGGATTGTAGCCGCACCTTCTCAAGTAAATCCAATCTGTGTAAGCATGTAAAGGCTGTCCATTTGCAAGATAAACCCTTTATGTGCGGCTTTCCGGATTGTGGCATGAGATTTTCTTATAAACATGTGAGAGATAACCATGAAAAATCCGGTTCGCATGTTTTTACCCTGGGTGATTTTGAAGAAACTGATGAACAGTTCAGGTCAAGCAATAGGGGAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTGGTTAGGAAGAGAGTTGCTCCCCCAACTCAACTAGAGTTGCTTATGAAGGGTGTTGAGTAG 1140 0.4053 MPSEELEANRRSNHEMPNTEMDNSFESNERPIFSDIRRYFCQYCGICRSKKTLITSHINSHHQVEMEKAGLERDQEAQGTKLNTCRECGMSFKKPAYLLQHMQSHSLERPYICTIDDCQASYRRKDHLNRHILQHEGEKFKCPIENCNRDFSLKGNMTRHVKEFHNKDSSTSINVKIQKQHVCLEIGCGKAFKFASKLEKHKDSHVKLESIEVVCLYPGCMKSFTNLQCLRAHTKSCHQYVNCETCGKKQLRKNIKRHLRKHETGSSSEVFHCDYKDCSRTFSSKSNLCKHVKAVHLQDKPFMCGFPDCGMRFSYKHVRDNHEKSGSHVFTLGDFEETDEQFRSSNRGGRKRKCPTVEMLVRKRVAPPTQLELLMKGVE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03440 379 SUPERFAMILY beta-beta-alpha zinc fingers 254 310 IPR036236 -
Mepo1g03440 379 MobiDBLite consensus disorder prediction 1 17 - -
Mepo1g03440 379 MobiDBLite consensus disorder prediction 1 27 - -
Mepo1g03440 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 140 IPR013087 -
Mepo1g03440 379 PANTHER ZINC FINGER PROTEIN 4 371 - -
Mepo1g03440 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 170 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 181 205 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 111 135 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 271 296 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 302 328 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 39 61 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 140 165 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 213 238 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 241 262 IPR013087 -
Mepo1g03440 379 SMART c2h2final6 83 105 IPR013087 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 142 165 IPR013087 -
Mepo1g03440 379 Gene3D Classic Zinc Finger 12 111 - -
Mepo1g03440 379 Gene3D Classic Zinc Finger 178 263 - -
Mepo1g03440 379 Gene3D Classic Zinc Finger 267 355 - -
Mepo1g03440 379 Gene3D Classic Zinc Finger 137 177 - -
Mepo1g03440 379 Gene3D Classic Zinc Finger 112 136 - -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Mepo1g03440 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 210 IPR013087 -
Mepo1g03440 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 301 IPR013087 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 113 135 IPR013087 -
Mepo1g03440 379 Pfam Zinc finger, C2H2 type 181 205 IPR013087 -
Mepo1g03440 379 Pfam Zinc finger, C2H2 type 84 105 IPR013087 -
Mepo1g03440 379 Pfam Zinc finger, C2H2 type 271 296 IPR013087 -
Mepo1g03440 379 Pfam Zinc finger, C2H2 type 111 135 IPR013087 -
Mepo1g03440 379 SUPERFAMILY beta-beta-alpha zinc fingers 139 167 IPR036236 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 273 296 IPR013087 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 304 328 IPR013087 -
Mepo1g03440 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 183 205 IPR013087 -
Mepo1g03440 379 ProSitePatterns Zinc finger C2H2 type domain signature. 215 238 IPR013087 -
Mepo1g03440 379 SUPERFAMILY beta-beta-alpha zinc fingers 97 139 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03440 Mepo-Chr1 39922527 39926178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03440 107 331 C2H2 Transcription Factor Family AT1G72050 49.638 2.53e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g03440 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03440 K09191 - gmx:100801812 541.191