Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03406 ATGAGTCCTTCAGCTGAAACGGAGATGGAAGATACTAAGCCTTCTGTTGTCGAAAATGGTGACCAAGCTCTGTCTCGTTTTTCCGAGTTTTCAAAGATTGAGCTAGCATTGGATGAGAAAAGCTGTAAAGAAGCAATGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCGTCAATGGGAAATGGAACGACAGAAGAAGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAGGCTGACTCAGAAAAATGAGGAGAGTGAAAAAGAAGAGATTGAGAATACTGGTCTTACCTTGTGTCGAATATTGAGAGCAGCAAAGCTTAACATTGCAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTCAAAGCTGGTCCAATTTTAAGCAATCGATTCGGCTCTGATTGGGAAAACAAGCTTGAGGCGAAAGAGATGCATGCTAACACTATTCACTTGAAGATTCTTAGCAAGTATTATAAGCGTGTATTTGAAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAACAAGTCATCTGTTACCAACCGTGTATCTGAGTGCCATCGTTTTGGATGGTTACTTTTCTTGGCTCTCCGTGTACATGCTTTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCTATCATGGCTATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCACGACTCTGCACGCTTTGTTAAGAAAAGCAGTAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAGAAGACACCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGGATTTTGATAAAGATGGGTTGACCTATTTTAAAGATCTCATGGAGGAATCATCTCTGGCATCTAGTTTGAATATCTTAGAAAATGATTATGATCAAATGACTCGCAACAAGGGTGAACTGGATGAAAGGTTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAAGTTTGTCTGGAGGTTCTTCAGTTTCAGCAGGAGGTGTAAAGAGGAAATATGATTTGATGATGTCACCTGCCAAGACCATTATAAGTCCGCTTTCACCCCAGCGCTCTCCTGCATCCCATGCTAATGGCATTCCAGGTAGCGCAAATTCAAAGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCGTCACAAGAGCTGGAGCGATTCTTGACTTCATGCGACAGAGATATTACAAGTGAGGTAGTACGCAGAGCACAGATTATATTGCAAGCTATATTTCCTAGTAGTCCCCTTGGCGACCGATGTGTAACTGGTAGCCTGCAAAGTGCTAATCTCATGGACAATATATGGGCCGAACAACGAAGATTAGAAGCCATGAAGTTATACTATAGGTTGTTGGCAACAATGTGCCGAGCAGAAGCTCAAATACTTGGCAACAATTTAACCTCACTGCTCACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCTACTCACAAGACTGTGACAATGTTGTTTCCTGCTGTACTGGAGAGGACTGGAATAACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAATTCATTGGAGGAACGACTTTTGGAGAGCTTGGTATGGGAAAAAGGTTCTTCGATGTATAATTCATTAGCAGTCGCTAGACCTGCCCTTTCTGCAGAAATCAATCGGCTTGGTATGTTAGCTGAACCAATGCCATCATTAGATGAAATCGCAATGCATATTAACTTCTCTTGTGGAGGATTACCTCCTGTGCCTTCCTTGCCTAAGCCTGAGACTTTGCCTGCTCAAAATGGGGATATGAGATCACCAAAGCGGCTCTGTACAGAGAATCGAAATGTTTTAGTGGAACGAAATTCTTTTACTTCACCTGTGAAAGATCGGCTTCTTCACTTAAGCAACCTTAAATCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCCAGTCCAACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGCGCAGAAACTGGGATCAGCGTCTTTTTTAGCAAGATTGTTAAGTTGGGAGCGGTCAGAATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTCTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTAGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCACAATGCAAGCCACAGGTTTTTCGTAGTGTATTTGTTGACTGGTCGTCGGCACGCCGTAACGGGGGATCTAGACATAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAACGAAGTTTTCATTCCCTCTGTAAAGCCACTTCTGGTTGAACTTGGCCCTGGTGGAGCAACTGTGAGAAGTGATCAAGTACCTGAAGCTAACAACAAAAATGACGGCCATTTAGTTCAAAACCCGGGATCTCCTAGAATATCACCTTTCCCAAGCCTTCCTGACATGTCCCCTAAAAAAGTGTCTGCCGCACACAATGTGTATGTGTCTCCATTAAGGTCATCCAAGATGGATGCTCTAATTTCACATAGCTCCAAAAGCTACTATGCATGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATAAACAATCGGTTAAACAGCAACCGGAAAGTAAGAGGACCCCTCAAGTTTGATGACATTGATGTGGGCTTGGTTAGTGACTCTATGGTTGCAAACAGTCTCTATCTGCAGAATGGAAGTTCCGCGTCATCATCGGGTGCACCATTGAAGTCTGAGCAACCTGACTCTTAA 3078 0.4217 MSPSAETEMEDTKPSVVENGDQALSRFSEFSKIELALDEKSCKEAMDLFGETKHLLMANVSSMGNGTTEEAERYWFAFILYSIKRLTQKNEESEKEEIENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPILSNRFGSDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANVENKSSVTNRVSECHRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFRNFNIHDSARFVKKSSKGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKTPCLASECETENLEDFDKDGLTYFKDLMEESSLASSLNILENDYDQMTRNKGELDERLFINEDDSLLASGSLSGGSSVSAGGVKRKYDLMMSPAKTIISPLSPQRSPASHANGIPGSANSKIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQILGNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAEPMPSLDEIAMHINFSCGGLPPVPSLPKPETLPAQNGDMRSPKRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGGSRHRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQVPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRGPLKFDDIDVGLVSDSMVANSLYLQNGSSASSSGAPLKSEQPDS 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03406 1025 SUPERFAMILY Cyclin-like 423 617 IPR036915 -
Mepo1g03406 1025 Gene3D - 193 351 - -
Mepo1g03406 1025 FunFam Retinoblastoma-related protein 1 689 906 - -
Mepo1g03406 1025 FunFam Retinoblastoma-related protein 1 418 605 - -
Mepo1g03406 1025 Pfam Retinoblastoma-associated protein B domain 739 870 IPR002719 GO:0005634|GO:0051726
Mepo1g03406 1025 SUPERFAMILY Cyclin-like 737 913 IPR036915 -
Mepo1g03406 1025 Gene3D - 418 605 - -
Mepo1g03406 1025 Coils Coil 327 347 - -
Mepo1g03406 1025 Pfam Retinoblastoma-associated protein A domain 415 615 IPR002720 GO:0005634|GO:0051726
Mepo1g03406 1025 FunFam Retinoblastoma-related protein 1 193 351 - -
Mepo1g03406 1025 SMART RB_A_2 415 615 IPR002720 GO:0005634|GO:0051726
Mepo1g03406 1025 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 25 1023 IPR028309 GO:0006357|GO:0051726
Mepo1g03406 1025 SMART DUF3452_2 86 232 IPR024599 -
Mepo1g03406 1025 Coils Coil 266 290 - -
Mepo1g03406 1025 Gene3D - 699 895 - -
Mepo1g03406 1025 MobiDBLite consensus disorder prediction 388 408 - -
Mepo1g03406 1025 Pfam Domain of unknown function (DUF3452) 97 232 IPR024599 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03406 Mepo-Chr1 39463754 39470567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03406 9 1025 Core Cell Cycle Gene Families AT3G12280 68.768 0.0 1392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mepo1g03406 RB_A 1.5e-62 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03406 K04681 - gmx:100777805 1675.6