Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03398 ATGGCTTCTTCAAAGACTGTGAAGGATGTTTCACCTCACGAATTTGTCAAGGCTTACTCAGCTCACCTCAAACGATCTGGCAAGTTGGAGCTGCCTGAGTGGACTGATCTTGTCAAAACTGCGAAATTCAAAGAATTGGCTCCCTATGATCCTGATTGGTATTATGTTAGAGCTGCTTCCATGGCAAGGAAGATCTACGTAAGAGGCGGTCTTGGTGTTGGTTCATTCCAAAGGATTTATGGTGGGAGCCAGAGGAATGGAAGTCGCCCTCCACATTTTTGCAAGAGCAGTGGTGCTATTGCTCGTCACATTCTTCAACAGTTGGAGAACATGAACCTTATCGAGATGGATACCAAAGGCGGCAGGAAAATTACATCCAGTGGCCGGAGGGATCTCGACCAAGTGGCTGGACGGATTCTAGTTGCACCTTGA 432 0.4722 MASSKTVKDVSPHEFVKAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKGGRKITSSGRRDLDQVAGRILVAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03398 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Mepo1g03398 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mepo1g03398 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mepo1g03398 143 FunFam 40S ribosomal protein S19 2 143 - -
Mepo1g03398 143 PANTHER 40S RIBOSOMAL PROTEIN S19 4 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Mepo1g03398 143 Gene3D - 1 142 IPR036388 -
Mepo1g03398 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03398 Mepo-Chr1 39349595 39352736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03398 1 143 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 82.517 1.47e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03398 K02966 - gmx:100499800 275.789