LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g03362	ATGAGCATTATGAGATTTCTTCTTAGCTTCATGCTTCTTCTTCTCTTCCTCTTCACACCAACAAATTCACAAACTCCAATTTCATTGAACACTTTCTGCAACAACTCAACTAAAAAACCTCTCACCACTTCATACAAAACCAACGTTAACAAAGTCCTACAATGGATGAACACTATTTCTTCAACAGGCCAAGAATCTAACCTAACCTCTATAGGAAGCAACAAGAATGATCACAATGACACAGTTTATGGAAACTATGACTGTCGCGGCGACATACCTGCACACTTCTGTAATTTCTGTGTCAACAGTGCTGTCAAAGAAATTTCACAAACTTGTACAAATGGTACCTCAGCTATTATATTCTATGACATGTGCATACTACGTTACTCTAACAAGAATTTCTTTGGAAAAATCAACTTATCTCCTTCATTTAATTTAACTGGACCAAAAACAATAAAGGACTCAAGAGATTTCGCGAAAGCCGAGAGTTTGATGAAGGATTTGATAAGGAAGACGACAGATGCTAATAGAATGTGGGCGACGAGCGTGTTTGATTGGAATGGGACTGAGAAAAGATATGGTTTGGTTCAGTGTGCTGGAGATCTTGATAATAATGGATGTAAAGAGTGTTTGAAGGAGTTGATAGATAGGGTTGCTGAGTGTTGTGGAACATCAGTAATGTGGGGTATTGTTGCTCCAAGTTGTGGAGTTAGGTTTGATGATAAAATGTTTTTCCAGGTATCTTCTGAGCAACCAGGGTCCTCTTCTTTGCCAAATCCAGGTGAATCGACGTTGAGCACCACTCCTCTAGATTTTCATAGTCATGTTCTAAGAGATGATTCATTGAATGGAGACCTTCCAATAATCCCTTTAATTGTACTTCAACAAAGCACTAATTACTTTTCGGAGTCAAGTAAATTAGGACAAGGTGGATTTGGATCTGTTTACAAGGGTACATTACCGGATGGGACTGAAATTGCGGCCAAAAGGCTTTCAGAAACATCAGGTCAAGGTTTAGAGGAGTTCAAGAATGAAGTGATTTTCATAGCAAAACTACAACATAGAAACCTTGTGAAACTCTTGGGTTGTTGCTTTGAACAAAATGAAAAGATACTAGTATATGAGTACATGCAAAATTCAAGCCTTGACTTTCACCTTTTCAATTTAGGAAATCATAATAAACTGGATTGGAATTTACGGCTAAACATTATCAACGGGATTGCAAGAGGACTGTTATATCTTCATGAGGATTCTCGACTTAGAGTTATTCACAGAGATATGAAAGCAAGCAATGTTCTTTTGGACGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAAGGTTTGAAAAAGGCCAAAGTCAGACAGAAACAAAAAGAGTCATGGGAACCTACGGATACATGGCTCCAGAATATGCTATGGCTGGGTTATTTTCAGTGAAGTCTGATGTTTTTAGCTTTGGAGTGCTCGTATTGGAAATAATTTATGGAAAACGGAACGGTGAATTCTTTCTTTCAGAACATAGGCAAACACTTCTCTTATATACTTGGAAACTATGGTGTGAAGGGAAAAGTTGGGAATTCGTTGATCCCATCCAAAGAAAATCATTCATTGAAAGCGAAGTTATGAAGTGCATACACATCGGTTTACTGTGTGTGCAGGAAGACGCTGCAGATCGACCAACCATGTCCACCATTGTTCTCATGCTAGGGAGTGACACGATGGTCCTTCCAAAACCGAAAAAACCAGCATTTTCGGTCGGAAGAATGTTCAATGATGGAGATTCCACTTCAAAAAGTTACACCGATAACTCGATTAACGAACTTACTATTACTAGTTTTATACCTAGATAG	1860	0.3817	MSIMRFLLSFMLLLLFLFTPTNSQTPISLNTFCNNSTKKPLTTSYKTNVNKVLQWMNTISSTGQESNLTSIGSNKNDHNDTVYGNYDCRGDIPAHFCNFCVNSAVKEISQTCTNGTSAIIFYDMCILRYSNKNFFGKINLSPSFNLTGPKTIKDSRDFAKAESLMKDLIRKTTDANRMWATSVFDWNGTEKRYGLVQCAGDLDNNGCKECLKELIDRVAECCGTSVMWGIVAPSCGVRFDDKMFFQVSSEQPGSSSLPNPGESTLSTTPLDFHSHVLRDDSLNGDLPIIPLIVLQQSTNYFSESSKLGQGGFGSVYKGTLPDGTEIAAKRLSETSGQGLEEFKNEVIFIAKLQHRNLVKLLGCCFEQNEKILVYEYMQNSSLDFHLFNLGNHNKLDWNLRLNIINGIARGLLYLHEDSRLRVIHRDMKASNVLLDDEMNPKISDFGLARRFEKGQSQTETKRVMGTYGYMAPEYAMAGLFSVKSDVFSFGVLVLEIIYGKRNGEFFLSEHRQTLLLYTWKLWCEGKSWEFVDPIQRKSFIESEVMKCIHIGLLCVQEDAADRPTMSTIVLMLGSDTMVLPKPKKPAFSVGRMFNDGDSTSKSYTDNSINELTITSFIPR	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g03362	619	Pfam	Domain of unknown function (DUF3403)	574	619	IPR021820	GO:0004674
	Mepo1g03362	619	Pfam	Salt stress response/antifungal	33	131	IPR002902	-
	Mepo1g03362	619	Pfam	Salt stress response/antifungal	160	241	IPR002902	-
	Mepo1g03362	619	CDD	STKc_IRAK	307	572	-	-
	Mepo1g03362	619	Gene3D	Phosphorylase Kinase; domain 1	272	376	-	-
	Mepo1g03362	619	SMART	serkin_6	301	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo1g03362	619	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	422	434	IPR008271	GO:0004672\|GO:0006468
	Mepo1g03362	619	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	270	376	-	-
	Mepo1g03362	619	SUPERFAMILY	Protein kinase-like (PK-like)	284	572	IPR011009	-
	Mepo1g03362	619	Pfam	Protein tyrosine and serine/threonine kinase	304	570	IPR001245	GO:0004672\|GO:0006468
	Mepo1g03362	619	ProSiteProfiles	Protein kinase domain profile.	301	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo1g03362	619	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	99	614	-	-
	Mepo1g03362	619	ProSiteProfiles	Gnk2-homologous domain profile.	27	134	IPR002902	-
	Mepo1g03362	619	ProSitePatterns	Protein kinases ATP-binding region signature.	307	329	IPR017441	GO:0005524
	Mepo1g03362	619	ProSiteProfiles	Gnk2-homologous domain profile.	139	244	IPR002902	-
	Mepo1g03362	619	FunFam	cysteine-rich receptor-like protein kinase 10	377	579	-	-
	Mepo1g03362	619	Gene3D	Transferase(Phosphotransferase) domain 1	377	579	-	-
	Mepo1g03362	619	Gene3D	-	145	244	IPR038408	-
	Mepo1g03362	619	Gene3D	-	27	134	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g03362	Mepo-Chr1	38741238	38745473	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g03362	8	619	Receptor kinase-like Gene Family	AT4G05200	40.327	1.57e-162	479

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mepo1g03362		PK_Tyr_Ser-Thr	1.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g03362	-		-	mtr:11406796	821.231