Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03301 ATGGGATATGGAACAAGAAAACTCTCAGATGAATATGAAGTTTCAGAAATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAACATTGAAGAAGAAAAATCACAATCACAAGTAGCAATCAAAACCCTAAGAAGGTTAGGTGCTTCAAATAACCCTAGTGGATTACCAAGAAGAAAAGATGCTGGAGAAAAAAGCACAATAGGGTTCCCTACATTGAGACAAGTTTCAGTTTCAGATACATTACTAACAAATGAGATACTTGTAATGAGACGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTATATGAGGACACAAATGGTGTTCATCTTGTCCTTGAGCTTTGTTCCGGTGGCGAACTTTTTGATAGGATTGTAGCACAAGATAAGTATAGTGAGACTGAAGCTGCAACTGTGGTTCATCAAATAGCTTCAGGGTTAGAAGCTGTTCATAGAGCTAATATAGTTCATAGAGATTTGAAACCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGACTCTCCTCTTAAGATTATGGATTTTGGGTTGAGTTCTGTTGAAGAGTTTACTGATCCCGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGGGTTATTCTATATATCTTACTTTCAGGGTATCCACCTTTCATTGCCCAAAATAATCGCCAAAAACAACAAATGATAATGAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAACCGGCAAAGAATTTGATTTCAAGTCTTTTAACTGTTGATCCTAGCAAGAGACCTAGTGCTCTTGAGCTTCTAAGTGATCCATGGGTCAAAGGTGAAAAAGCCAAAGATGTTCAAATGGACCCTGAGATTGTCTCAAGGCTACAAAGCTTTAATGCAAGACGTAAACTTCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTTAGAACAAAAAAATTGAAATCATTGGTTGGATCCTATGATCTCAAAGAAGAAGAAATTGAAAATCTCAGGATGCATTTCAAGAAGATATGTGCAGATAGAGACAATGCAACTCTGTCTGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGTTATCATTGATACCTTTTGCTTCTCGAATATTTGATTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGTGAGATACTTTGTGGCTTTTCCAGTCTCAAGAATTCCAAAGGAGAGGATGCTCTTCGTTTGTGCTTCCAGATGTATGATACAGATAGATCAGGCTGCATCAGCAAAGAAGAAGTAGCATCTATGCTAAGGGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAATTGGATGAGATTTTTGACTTAATGGATGCCAATAATGATGGTAAAGTTACATTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCTCTTCAAGATGTAGTTCTCTCATCTCTTCGTCCATAA 1572 0.3702 MGYGTRKLSDEYEVSEILGRGGFSVVRKGTKKSNIEEEKSQSQVAIKTLRRLGASNNPSGLPRRKDAGEKSTIGFPTLRQVSVSDTLLTNEILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIASGLEAVHRANIVHRDLKPENCLFLDVRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGNFSFYEKTWKGISQPAKNLISSLLTVDPSKRPSALELLSDPWVKGEKAKDVQMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEEEIENLRMHFKKICADRDNATLSEFEEVLKAMNMLSLIPFASRIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSSLRP 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03301 523 Gene3D Phosphorylase Kinase; domain 1 5 134 - -
Mepo1g03301 523 Pfam Protein kinase domain 88 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g03301 523 SMART serkin_6 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g03301 523 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Mepo1g03301 523 ProSitePatterns Protein kinases ATP-binding region signature. 18 47 IPR017441 GO:0005524
Mepo1g03301 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Mepo1g03301 523 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 129 - -
Mepo1g03301 523 SUPERFAMILY Protein kinase-like (PK-like) 7 326 IPR011009 -
Mepo1g03301 523 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Mepo1g03301 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 487 - -
Mepo1g03301 523 CDD EFh 441 508 IPR002048 GO:0005509
Mepo1g03301 523 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Mepo1g03301 523 Gene3D - 350 517 - -
Mepo1g03301 523 CDD STKc_CAMK 12 305 - -
Mepo1g03301 523 Pfam EF hand 408 424 IPR002048 GO:0005509
Mepo1g03301 523 ProSiteProfiles Protein kinase domain profile. 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mepo1g03301 523 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Mepo1g03301 523 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Mepo1g03301 523 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 349 518 - -
Mepo1g03301 523 Gene3D Transferase(Phosphotransferase) domain 1 135 349 - -
Mepo1g03301 523 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Mepo1g03301 523 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 133 323 - -
Mepo1g03301 523 Pfam EF-hand domain pair 439 508 IPR002048 GO:0005509
Mepo1g03301 523 SUPERFAMILY EF-hand 350 514 IPR011992 -
Mepo1g03301 523 SMART efh_1 440 468 IPR002048 GO:0005509
Mepo1g03301 523 SMART efh_1 482 510 IPR002048 GO:0005509
Mepo1g03301 523 SMART efh_1 404 432 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03301 Mepo-Chr1 38090997 38095810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03301 3 509 EF-hand Containing Proteins AT5G23580 34.442 1.86e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Mepo1g03301 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03301 K13412 - gmx:732616 887.486