Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03223 ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAATCCAGAGGCGAGGCAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGTCATCTTGTGTGGGACCAAAACTGTGATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTGGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCCCGATCTAAACGATGTTCTAGAAACCTCTTCCTCTAACATAGAGGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGAGATGCTAAAAGAATACAAATTGGCCCTACTCAGCCAACCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGGATATGGTAAAATCACGTCTTTGTGATTTAGATATATCACAATCAATGATGCTCCTTGCAAAGGAGCCCGTGGTTGGAATTAAAAACTAA 501 0.4212 MGRRKIEIAMVKNPEARQVTFSKRRMGLFKKANELVILCGTKTVIVVFSPGNKPYSFGHPGVDAIASKFLQQEPDLNDVLETSSSNIEDLNQQHEKVMADIAEAEKEDKANEEMLKEYKLALLSQPKEWKDSLMELKDMVKSRLCDLDISQSMMLLAKEPVVGIKN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03223 166 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mepo1g03223 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 PANTHER MADS BOX PROTEIN 3 140 - -
Mepo1g03223 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mepo1g03223 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g03223 166 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Mepo1g03223 166 Coils Coil 80 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03223 Mepo-Chr1 37020114 37020712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03223 1 158 Type I MADS-box Gene Family AT2G34440 39.181 4.73e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g03223 SRF-TF 7.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03223 - - psat:127135568 206.068