Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03208 ATGGATTCTGCAGGTAGAGATGATAATCTATGTGCTCAACTATGGCATGCATGTTCCGGATCTGTATACATCCCTAAGGTTGGGGATAAGGTTTTCTACTTCCCTCAAGGACACTTAGAGCAGGAGGTCGCAATACTTCAATATGAACAAAATCACAACATGGAAATTCCTAACTATCATTTGCCTTCTAAAATTTTATGCATAGTTGTGGGTGTTCAATTAAAGGTATTGTCATATTTCTATAAGTTTATTGTTTTTATTAACTTAAAATGTTTAATGCATCAACAAGAATATGTATTAGAGGAAAATCATGCACTTCATAGTCCTAATGAAATCTACTCTTTTAGTAAGTTGCTCACTTCAATGGAAACAAGTACACATGGTGGACTTTATATTCCAAAGCAACATGCAGATAGATGCTTCCCCCAACTGGATATGACCCTTCAACCACCAATGCAAGATCTAGTGGCGAAGGACATGCATGAAATTGAATGGAATTTTCGACATATTTATCGTGATCATGAGAGAGCACACTTGCTTACTAATGGTTGGAGCACATTTGTAAACTCTAAAAATCTTCTTCCTGGAGATTCATGCATTTTTGTCAGGGGAGAGAATGGTGAAATTGGTATTGGGATTCGTAGAGCAATGAAACAACATAACCACATATGCACAAAATTGTATCAACAATCAAGTCAAAACATTCAACTTGGAGCATTGGCTGCTGTTGTCCATGCTGTTTCTATTGGAAGTTTGTTCCATGCCCAGTACCACCCTTGGATTACTCCCTTTGAATTTATGATTCCTCTGAAAATTTATGTTGAGTCCATTGAAAAAGACTACTCAGTTGGAAGGAGGGTACACATGTTGTCTGAAGTTGAAGGATGTCCAAGAAGGTATGGTACAATAGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCTGGTTCAGAATGGAGATGTATCAAGGTGCAATGGGATTCCATACCAAATATTGAGAGGGTTTGTCCATGGTGGATTGAGCCCTTGGGATCTCCCAAGATTATGTTGAAGGGCATTTCAATTCTCCCTTTACCAAATAAAACAGATGCACCTAACTCATCATTGCTTGGATTAAATAACTTTGTTAATGAGGATATAGTGTGGAGTTCCTCTAAACCTGAATATCACAAAGTGGATATGGACTTGGAAGGTCAACAAAACAATACTGGAAATGATAATAAGTCAATCTTTTCCATTTTTGCTTTCTTTATATGTCTTTGCTTTTTTATATTTGTAATTTTTGTCTTTCGTCCTCTTCTATAA 1305 0.3678 MDSAGRDDNLCAQLWHACSGSVYIPKVGDKVFYFPQGHLEQEVAILQYEQNHNMEIPNYHLPSKILCIVVGVQLKVLSYFYKFIVFINLKCLMHQQEYVLEENHALHSPNEIYSFSKLLTSMETSTHGGLYIPKQHADRCFPQLDMTLQPPMQDLVAKDMHEIEWNFRHIYRDHERAHLLTNGWSTFVNSKNLLPGDSCIFVRGENGEIGIGIRRAMKQHNHICTKLYQQSSQNIQLGALAAVVHAVSIGSLFHAQYHPWITPFEFMIPLKIYVESIEKDYSVGRRVHMLSEVEGCPRRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSIPNIERVCPWWIEPLGSPKIMLKGISILPLPNKTDAPNSSLLGLNNFVNEDIVWSSSKPEYHKVDMDLEGQQNNTGNDNKSIFSIFAFFICLCFFIFVIFVFRPLL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03208 434 Pfam Auxin response factor 243 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo1g03208 434 Gene3D - 280 348 - -
Mepo1g03208 434 Gene3D - 112 217 IPR015300 -
Mepo1g03208 434 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Mepo1g03208 434 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Mepo1g03208 434 FunFam Auxin response factor 113 217 - -
Mepo1g03208 434 SUPERFAMILY DNA-binding pseudobarrel domain 106 222 IPR015300 -
Mepo1g03208 434 CDD B3_DNA 114 215 IPR003340 GO:0003677
Mepo1g03208 434 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 354 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo1g03208 434 SMART B3_2 115 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03208 Mepo-Chr1 36840518 36850424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03208 10 370 B3 DNA Binding Superfamily AT5G62000 44.828 2.20e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo1g03208 B3 2.9e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03208 - - psat:127135586 567