Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03172 ATGAATCGTAGTTTGAGGCATGCGGGAGGATTCACCAACATAGACAATGTTCTTGTTCTTAACGATTCCTTTGTCGCCAATAACTTGTTTTCTTCTTCATCAAGAACGAGGCTTGTGAATCATCGTCCAAATGTTTCTGCTGCTTCTTTGAATCGTATTAATGGAGGTGGTATGATGCTACATGATCATATTCTTCTATTTGATCATTCTTCTGTCGGCAGAAACATGGGTCACCACTTTCCTTTTGAATTGAGTCGCACTACTCATCAAAATTCTACTCGACAACATCATGAAACAACAACAACATGGTCTTCTGAAGCAGAATCAATGTGCTGTATTTGTCTCACAGAGTTGTCCAATGGTTCAAGCGTAGTTCAGATGCCTCAAGACTGCTGCTCACATGTGTTTCACAAAGATTGTATTCGGAAGTGGATTACTGTTCGAAGCACATGCCCTTTGTGTCGAAGAAATGTGCACTGA 480 0.4062 MNRSLRHAGGFTNIDNVLVLNDSFVANNLFSSSSRTRLVNHRPNVSAASLNRINGGGMMLHDHILLFDHSSVGRNMGHHFPFELSRTTHQNSTRQHHETTTTWSSEAESMCCICLTELSNGSSVVQMPQDCCSHVFHKDCIRKWITVRSTCPLCRRNVH 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03172 159 Pfam Ring finger domain 110 155 IPR001841 -
Mepo1g03172 159 SUPERFAMILY RING/U-box 99 158 - -
Mepo1g03172 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
Mepo1g03172 159 ProSiteProfiles Zinc finger RING-type profile. 111 155 IPR001841 -
Mepo1g03172 159 PANTHER TARGET OF ERK KINASE MPK-1 85 158 - -
Mepo1g03172 159 SMART ring_2 111 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03172 Mepo-Chr1 36370565 36371044 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03172 105 158 C3H Transcription Factor Family AT1G80400 46.296 2.90e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03172 - K19039 tpra:123898208 77.7962