Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03137 ATGGGTCGTCGCAAAATTGCGATTGCAAGGGTGAGAGACCCTGTCATAAGGCAGGTTACATTCTCTAAGCGTCGAACAGGATTATTCAAGAAGGCAAATGAACTTGCCATCTTGTGCGGGGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTTGCATCCAAATTTCTTGAAGGAGAGCTCAACCTAGATGATGGCATAGGAAGCTCATCTTCTGAAGTTTCAAACAGAGAGGATCTGAATCAAGAACTTGAAGATGTGCTAGCTCAACTAAAGGAGGCCGAAAATGAAGCTAGGGCACATGATGAGATCCTTGAAGAATACAAACTGACTGAACTCACTCAACTTGAGGAATTGAAAGATTCATATGGGAAATTTAAGGAAATGGTGAAATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTGGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG 546 0.4158 MGRRKIAIARVRDPVIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEGELNLDDGIGSSSSEVSNREDLNQELEDVLAQLKEAENEARAHDEILEEYKLTELTQLEELKDSYGKFKEMVKSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03137 181 Gene3D - 16 78 IPR036879 GO:0003677|GO:0046983
Mepo1g03137 181 PANTHER MADS BOX PROTEIN 3 144 - -
Mepo1g03137 181 Coils Coil 87 124 - -
Mepo1g03137 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mepo1g03137 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g03137 181 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mepo1g03137 181 FunFam Agamous-like MADS-box protein AGL62 14 78 - -
Mepo1g03137 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g03137 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g03137 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g03137 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03137 Mepo-Chr1 35590385 35590930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03137 1 162 Type I MADS-box Gene Family AT2G34440 41.860 1.45e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo1g03137 SRF-TF 7.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03137 - - psat:127135568 213.386