Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03042 ATGTATGAGATAATCCTAACCAGCTCACCGGAAGGTCCCATGATAGCATTTGATGCTTCCACCGGTGCCACGGTTGCGCAGTTCACTGGCAGCCGGTCACCATGTCGCGGTCTCATGGTGACAAGCCAAGGATTCATTGCAGCTTCTCATGTGTCCTCAAACACAGGGACGGGTTTGATCCACATTTACAATTGGCACACTCCAACGGTCTTCCAAAATATCCCTCTCCCTGAACCTGTGGCTCCACTAGCCGCCACCTTAGATGGTGATTTTCTCTTTGCAGGTGGCGTGTCGGGGAGTATCCACTCCTTGTCGCTCCCTTCCGGAGATATCATCAAATCATTCACTCCTTACTCGAAACCTGTTTCTAGTCTCCACCTTAGTGATGATGGATCACTATTGATTTCAGGTAACAATGATGGAACTATTGTTGTGATCCCATCATTTAAGCTTGTTGATGATTCCTCTTCTTGTAGTGATCCAATATTACACAAATGGAAGGCACATTCTGACTCAGTGACATGTTTCAACTCTGGAATTGGCATTCATGCTTGTACGTTCGTTTCTTGTTCCATGGACTGCACATGTAAGTTTTGGAGTTTATCGAATGGCATGACTCTAATGCGAACCGTCACATTTCCATGTGCCATTTTTGGGTTTGTTATGGATTCAACAGAGTCAGGGTTCTATGCTGGTGGTTCAGACGGGTTTGTTTATAAAGGGTTAATGAAAGTTGGGAATAGAAAAATGTTAGAAAAAGGAAAAGCTTATGAATTGGTTAATTTGGGTAACAAAACAAAAAGTCATGATGGGTCAATTATGTCTTTGGTTTTGGTGAATGAAGGGAGGAATGTGGTGTCTGCTTCAGAAGATGGGAGTGTTTGGATGTGGGATGTTGAGAAAGGTGAAGTTATTATGGTTTTGGGGAATGATCAAATATTAGGAAGAAGATCAACAAGAAGCATTAGTGATATGATAGTGGTCAAAGGGAGTAATGTCACAAAGGGAAATGGTAGTAGTAAAGGTGGTGCTATAAGTGGTTTTAGTTCTTCTGGATTATGTGATGAAGAGGTGATTAAGACTTTGATGCAAATTACAGAGCTTGGAAATGTGATGGATGTGGCAGTTCATGACAAGAGAAGAGCCATTGATATGCTTGAATCTGCTATTACAATGTATGAGAGGCTATTGAGGCTTATTCTTAGGGAAGTCACCAAAGCAATTGAAGAGGCGGATCATGAGGATGAAGACTTGGATAACAAAGGGAAAAAAGATTTGAATTAA 1284 0.4182 MYEIILTSSPEGPMIAFDASTGATVAQFTGSRSPCRGLMVTSQGFIAASHVSSNTGTGLIHIYNWHTPTVFQNIPLPEPVAPLAATLDGDFLFAGGVSGSIHSLSLPSGDIIKSFTPYSKPVSSLHLSDDGSLLISGNNDGTIVVIPSFKLVDDSSSCSDPILHKWKAHSDSVTCFNSGIGIHACTFVSCSMDCTCKFWSLSNGMTLMRTVTFPCAIFGFVMDSTESGFYAGGSDGFVYKGLMKVGNRKMLEKGKAYELVNLGNKTKSHDGSIMSLVLVNEGRNVVSASEDGSVWMWDVEKGEVIMVLGNDQILGRRSTRSISDMIVVKGSNVTKGNGSSKGGAISGFSSSGLCDEEVIKTLMQITELGNVMDVAVHDKRRAIDMLESAITMYERLLRLILREVTKAIEEADHEDEDLDNKGKKDLN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03042 427 Gene3D - 153 314 IPR015943 GO:0005515
Mepo1g03042 427 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 303 - -
Mepo1g03042 427 PANTHER WD-REPEAT PROTEIN 18 2 404 IPR045227 -
Mepo1g03042 427 Pfam WD domain, G-beta repeat 112 145 IPR001680 GO:0005515
Mepo1g03042 427 Pfam WD domain, G-beta repeat 163 200 IPR001680 GO:0005515
Mepo1g03042 427 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 303 IPR011047 -
Mepo1g03042 427 Coils Coil 401 421 - -
Mepo1g03042 427 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Mepo1g03042 427 Gene3D - 2 152 IPR015943 GO:0005515
Mepo1g03042 427 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Mepo1g03042 427 SMART WD40_4 159 200 IPR001680 GO:0005515
Mepo1g03042 427 SMART WD40_4 259 298 IPR001680 GO:0005515
Mepo1g03042 427 SMART WD40_4 21 64 IPR001680 GO:0005515
Mepo1g03042 427 SMART WD40_4 108 147 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03042 90 301 U-box Gene Family AT1G04510 26.852 3.75e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03042 K14829 - gmx:100785191 454.521