Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03018 ATGGAGAAAACGGTGATCGAACGGCAGACATTGCGGTGTATCATATCTGCTTCTTCTCCTTCATCAGAAGTGTTTAGAATCCATGTTGAAGCTAACGGTTGGCTTAACGCTCATGCAACGTTCTATGGGGCCAATCAAAGTCCAACCAGCCTTGGAGGAGCTTGTGGTTATGACGATACTTTTCATGCTGGGTTTGGAGTGAACACAGCAGCAGTGAGCACTATGCTTTTCAGAGATGGTGAGGTTTGTGGTGCATGCTACCAAGTCATATGTGACAATAAAATCGACCCAAAATGGTGTCTTAGAAGTCGAAGTGTTACAGTAACTGCCACAAATTTTTGTCCTCCAAACAATCATGGAGGATGGTGTGATCCTCCACACCATCACTTTGATATGTCCATGCCTGCTTTCTTTCGCATTGCACGACAAGGAAATGAAGGCATTGTTCCTGTTCTTTATAGAAGGGTAGCATGCAAAAGAAGAGGAGGAGTTAGGTTCACATTGAAGGGTCAATCAAATTTCAACATGGTGATGATAACAAACGTTGGTGGCAGCGGTGATGTAAAGGGGGTGTGGATAAGAGGTTCCAGAAGTGGAGCTTGGTTGCCATTGCACAGAAATTGGGGTGCTAATTGGCAAAGCAGTGCAGATCTAAGAAACCAAAGACTCTCATTCAAGATTACTTTGGTTGATGGTAAAACATTGGTGTTTCTCAATGTAGTGTCTTCCAATTGGAGATTTGGACAAACATTTTCATCCCATAATCAATTCTATTAG 777 0.4286 MEKTVIERQTLRCIISASSPSSEVFRIHVEANGWLNAHATFYGANQSPTSLGGACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVICDNKIDPKWCLRSRSVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYRRVACKRRGGVRFTLKGQSNFNMVMITNVGGSGDVKGVWIRGSRSGAWLPLHRNWGANWQSSADLRNQRLSFKITLVDGKTLVFLNVVSSNWRFGQTFSSHNQFY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03018 258 Gene3D - 19 159 IPR036908 -
Mepo1g03018 258 SMART dpbb_1 69 153 IPR007112 -
Mepo1g03018 258 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Mepo1g03018 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Mepo1g03018 258 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Mepo1g03018 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Mepo1g03018 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 163 IPR007112 -
Mepo1g03018 258 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Mepo1g03018 258 CDD DPBB_EXPA_N 33 158 - -
Mepo1g03018 258 SUPERFAMILY Barwin-like endoglucanases 26 181 IPR036908 -
Mepo1g03018 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Mepo1g03018 258 PANTHER EXPANSIN-A15 30 256 IPR002963 GO:0009664
Mepo1g03018 258 Gene3D - 163 258 IPR036749 -
Mepo1g03018 258 Pfam Lytic transglycolase 69 153 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03018 Mepo-Chr1 33549277 33555254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03018 31 256 Expansin Gene Family AT3G15370 62.891 5.19e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03018 - - gmx:106795376 461.07