Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02875 ATGAGCGATCATGTGGTGTTGTTTGTGGACCGATTAATGCGACCGATGCCGGTTGAGCCGTTGGCTCAACATCCGGCTCAGCCTGCTCCTGAACCGATGCCGCCGGTGATTCATTCACCGGCGGGGCCTTCGGGTTCATCTTCAGCGGCGGATGATGATGTCGGTGAGGATGAGCCGCTGTTGCAGCAGATGGAGATGGCTGAGTGTAGGATTTGTCAGGAGGAGGATGGTATTGATAATCTGGAGAATCCTTGCGCCTGTAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAACGCTGGTGCAACGAAAAAGGAGACACAACTTGTGAAATTTGTCATAAGTCCTATGAACCTGATTATACTGCTCCACCACCTTGTCCACATCCTGAAGAAACTACCATTGATATAGGCGGAGGCTGGACACTCTCTGGCACACCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCAGAGGCAGAACGCCAATTCTTCGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAATGGAGCTGCATTTTGCCGTTCAGCTGCTCTGATCTTAATGGCCCTTTTACTCTTGAGGCACGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTATGTTTTTCTCTCTTTTCTTGCTTCGAGCCGCTGGCTTTCTTTTACCTTGTTATATCATGGCTTGGGCAATCAGTATTTTGCAACGACGGCGACAAAGACAAGAGGCTGCAGCATTGGCGGCAACTCAAGTTGCTTTCGTGCTACAATCTGGGCAGCATAGGGGACTGCAATTTGCCATAACACCAGCAGCAACAGTGAATCCACACCCACACCAAGAACAAGTGTAG 870 0.4954 MSDHVVLFVDRLMRPMPVEPLAQHPAQPAPEPMPPVIHSPAGPSGSSSAADDDVGEDEPLLQQMEMAECRICQEEDGIDNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPDYTAPPPCPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADAEDDPSMFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAITPAATVNPHPHQEQV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02875 289 SMART ringv_2 68 115 IPR011016 GO:0008270
Mepo1g02875 289 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 248 IPR033275 -
Mepo1g02875 289 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Mepo1g02875 289 Pfam Protein of unknown function (DUF3675) 120 238 IPR022143 -
Mepo1g02875 289 SUPERFAMILY RING/U-box 63 119 - -
Mepo1g02875 289 MobiDBLite consensus disorder prediction 21 55 - -
Mepo1g02875 289 MobiDBLite consensus disorder prediction 21 39 - -
Mepo1g02875 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 125 IPR013083 -
Mepo1g02875 289 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Mepo1g02875 289 CDD RING_CH-C4HC3_MARCH 69 115 - -
Mepo1g02875 289 FunFam RING/FYVE/PHD zinc finger protein 55 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02875 Mepo-Chr1 30872058 30875413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02875 68 115 C3H Transcription Factor Family AT2G37950 45.098 1.40e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02875 - - gmx:100817542 411.379