Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02866 ATGGACATGACCTCAAGAAACATCATAGATGCAGATTCTCAAACACAAACACCACTATCTACACAACCAATAACCTTAAAGTCTTCACCTTTCACAAACGGAACACATAAACGCCAAGTGACAACAACCACCACCGCTACTCCACCACCACCACCATCTTCCATGGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCTGCATCCCTAGGTGGACATGCACTTGATGGATGTGGTGAATTCATGCCATCATCATCTCTCAATTCTAATGACCCTAGATCCCTTAAATGTGCTGCTTGTGGCTGTCACCGGAATTTCCACCGCCGTGAGCCACAAGAGCACATCCTTACAACCACCACCTCGACCACCACTATGGCAACAGCCAGCAACAAAAACAGCCCACCTTTTCTTAGCTGTATCTACACAACACCTTCAACAACAGTTCCACCACCACAACCACCACCACCGTTACCACTGCCACACCGTGGTCCAATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGTCATAGCCCAAGTCCAATTTCAAGCCCATCATCACCACCACCACTCTCACATTTACCACCTTCTTATCATCATTCTTCAGCTCCACACATGCTTTTAGCTCTTGGAGGAAATGCTTATTCAACACCACCACAACACTCTGATCATGATCAACACCACCACCACCACCAAAACCATCTTCAAAGGAATCTCAATTTTGCTTCATCTGTTGTTAAGCTTGAAAGCCACAACAACAACAACAACACTAGTAGTGGGAAAAAGAGATACAGGACCAAATTCAGCAAGGAGCAGAAAGAGAAAATGCATGGTTTTTCAGAGAAATTGGGTTGGAAAATGCAAAAGAGTGATGATGGGTTGGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGAGTTTTCAAAGTTTGGATGCATAACAACAAGAATAGTAGTTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGGAATTGGAATTGGAATTGCAACTCAAATTGCTACTCAAAATGATGATAAGAATAATATTGGTAATGGTAATGATAATGATGATGGTTCCAACAATGTCATTCATCATATGAATGAAGATGGGTGTGTCAATGTTCATGTTTCTTCTGTTAATGGTTTATCCTCTTAA 1167 0.4165 MDMTSRNIIDADSQTQTPLSTQPITLKSSPFTNGTHKRQVTTTTTATPPPPPSSMVVSYKECLKNHAASLGGHALDGCGEFMPSSSLNSNDPRSLKCAACGCHRNFHRREPQEHILTTTTSTTTMATASNKNSPPFLSCIYTTPSTTVPPPQPPPPLPLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHLPPSYHHSSAPHMLLALGGNAYSTPPQHSDHDQHHHHHQNHLQRNLNFASSVVKLESHNNNNNTSSGKKRYRTKFSKEQKEKMHGFSEKLGWKMQKSDDGLVQKFCNDIGVSRGVFKVWMHNNKNSSLRKKSESDVGIGIGIGIATQIATQNDDKNNIGNGNDNDDGSNNVIHHMNEDGCVNVHVSSVNGLSS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02866 388 FunFam Zinc-finger homeodomain protein 2 249 324 - -
Mepo1g02866 388 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 146 162 - -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 118 145 - -
Mepo1g02866 388 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 1 44 - -
Mepo1g02866 388 Gene3D - 248 323 - -
Mepo1g02866 388 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 321 - -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 118 238 - -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 1 53 - -
Mepo1g02866 388 NCBIfam homeobox domain, ZF-HD class 263 320 IPR006455 -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 347 364 - -
Mepo1g02866 388 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 183 197 - -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 163 182 - -
Mepo1g02866 388 MobiDBLite consensus disorder prediction 347 369 - -
Mepo1g02866 388 SUPERFAMILY Homeodomain-like 253 321 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02866 Mepo-Chr1 30705613 30706865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02866 1 362 ZF-HD Transcription Factor Family AT3G28920 39.503 4.93e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo1g02866 ZF-HD_dimer 4.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02866 - - tpra:123899747 395.201