Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02588 ATGAGTGAAAGTGAAAATTTTGAGGTAGATAGAAAGGAGGGTCCTTTAGATTGGAGGTTTGTGAGTGGCAACCTTGCAAATTCATCTGTAGGTTTGGTTTCCATGGAAAACTCTATGATGGGTTCTTCTTCATGTCCTAACTCAATGGTAGATTCATATGGTCCTAACTTTTTGGACCTTCTTACTAATTCTGAAAACTTGGGTGGTTTTTGTGATGTTAATGGTCAGAGCAATGAAGTGAGAAAAGATGGGTTTGGTTTTGCAAGAGTTAGTTGTGATGATAGAACAGTTGGAATGGGTTGGGACCTTGGTAGTAGTTCTATGATGAAGAGGGATGGTGTTTTAACAAATGGGGCTGAGATATTTCCTCAAAGTTTGTCTCAGTTTTCAACTGATTCTGGATTTGTTGATGCTGCAAGGATGTCATGTTTTAGTGCCGGGAGTTTCGTAGATATGATGAACTCATGTGGGATTCCTCAATCTATGGCTCTACCTCTACATGTGTCTCGATCTGTTGAGCATCTTGGTAGCGATGGAAGTCCAATCCAGAATGACCGAAGAAGTGATTGTCGTGTAATGTCTCAAGATGAAGGGAAACAAGCTCTTGGAGGGTCTTGTTATGAAGCTGATGGAGATGAATCAAGTGGTGATGATGGTTCCCAAATGTTGGATTGTGCAAGTGGAGAACCTTCTATTAAAGGTCTAAATCCAAAGAAAAGGAAAAGAAATGGACAGGATGGTGATAGTGATAAAGCCACCGGAACTCTTGAGCTACCAAGTGAAACTGCAAAGGACAACTGTGAGAGCAGGAAAAAGGGAAAGCAACAAACAAGTTCAACAACCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCGCCTAACGAGGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATTAATTATGTACAGTCTCTTCAACAACAAGTTGAGTTTTTATCAATGAAACTTGCAACAGTAAATCCACATGTGGATTTTAATATGGAACGGCTGCTTCCTAAAGATATTCTTCAACATCAACCCGGTCCGTCATCTGCTCTGGGGTTTCTCAGAGAAATGCCAATGGCTTTTCCTCCATTATCACATTCATATCAACCAGGACTGATTCATTCAACTCTACCTAACATGGCAAATTTATCAGATATGCTTAGGCAGACTGTTCAACCACAGTTGGAACCTTTGGCTGGAGGGTTTAAAGAGCCAAATCAGGTCAATCCATTGCAAGCAGCCAAGGACTGA 1404 0.4181 MSESENFEVDRKEGPLDWRFVSGNLANSSVGLVSMENSMMGSSSCPNSMVDSYGPNFLDLLTNSENLGGFCDVNGQSNEVRKDGFGFARVSCDDRTVGMGWDLGSSSMMKRDGVLTNGAEIFPQSLSQFSTDSGFVDAARMSCFSAGSFVDMMNSCGIPQSMALPLHVSRSVEHLGSDGSPIQNDRRSDCRVMSQDEGKQALGGSCYEADGDESSGDDGSQMLDCASGEPSIKGLNPKKRKRNGQDGDSDKATGTLELPSETAKDNCESRKKGKQQTSSTTKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMERLLPKDILQHQPGPSSALGFLREMPMAFPPLSHSYQPGLIHSTLPNMANLSDMLRQTVQPQLEPLAGGFKEPNQVNPLQAAKD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02588 467 MobiDBLite consensus disorder prediction 273 297 - -
Mepo1g02588 467 MobiDBLite consensus disorder prediction 234 248 - -
Mepo1g02588 467 FunFam Basic helix-loop-helix transcription factor 308 380 - -
Mepo1g02588 467 Gene3D - 308 380 IPR036638 GO:0046983
Mepo1g02588 467 SMART finulus 317 367 IPR011598 GO:0046983
Mepo1g02588 467 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 380 IPR036638 GO:0046983
Mepo1g02588 467 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 361 IPR011598 GO:0046983
Mepo1g02588 467 Pfam Helix-loop-helix DNA-binding domain 314 362 IPR011598 GO:0046983
Mepo1g02588 467 CDD bHLH_AtBPE_like 301 386 - -
Mepo1g02588 467 MobiDBLite consensus disorder prediction 173 301 - -
Mepo1g02588 467 MobiDBLite consensus disorder prediction 448 467 - -
Mepo1g02588 467 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 206 411 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02588 Mepo-Chr1 27320363 27323988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02588 17 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 42.391 2.38e-94 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g02588 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02588 - - tpra:123921399 700.664