Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02541 ATGGATTACAACAGAGACGGCAACGTCGTTCAAATCATCACCACCGGCGGAGCCGCCGATAGCTGGTCTACCGACCAAGCTGACTGGGCGACGGAAGATGAGTATCGTTACTGGAACGGAAACGATGCTGGTGGCGAAACAACTCCTTCTTCAAATTCACGTGCAGGAAGTGAGCCGCCGAGTAAGAAATCGAGAAGCAATTCGCAAGAAGGTGGTGGTGGTGGTGGCAGTGGCGGCGGTGTAGGAGGATCGAATCGCGCGAAAGCGATAGGGAAAATGTTTTTTAAGACGAAACTATGCTGTAAGTTTCGTGTGGGGACATGTCCTTATATAACGAACTGTAATTTTGCTCATAGTGTGGAGGAGCTTCGTCGGCCGCCGGAGAATTGGCAAGAGATTGTGGCTGCTCATGAGGAAGAGAGGAGTGTGATTGAGCAGCCAAGGGAAGAGTTTCAGATACCGACGGTTGGGTCAAGTACTTTTGTAGGGGAGAGTATGAATAATAGGTCTTATAAGGGGAGACATTGTAAGAAATTTTATACCGAAGAAGGTTGTCCTTATGGGGATAGTTGTACTTTTCTTCATGATGAGCAATCGAAGAATCGTGAGAGTGTGGCGATTAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGTGGAAGTGTTAGTAGTGGTGTTGGTAGTGGTAGTGGTGTTGTTGTTGTTGCGGCTGGTGCGGCCGCGGTTGGGAATGGACCTAATTTGAAGCCTTCGAATTGGAAAACTCGGATTTGTAATAAATGGGAGATGACTGGGTATTGTCCCTTTGGTAACAAATGCCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAATCAGAGATGGTGTTTCTGCTGTTGCCTCTGACACAAAACAGGGAGTACCTTCCAAAACTCATGCTGATAATGTGGTTGCATCAAATCCTCCTATTGGTTCAGATGTTTATCATCTTGGAGTCCCTTCACAAAGACCTTCCATTGTGAGTCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATCGATGACTTCGAATAG 1137 0.4714 MDYNRDGNVVQIITTGGAADSWSTDQADWATEDEYRYWNGNDAGGETTPSSNSRAGSEPPSKKSRSNSQEGGGGGGSGGGVGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPENWQEIVAAHEEERSVIEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGGGGGGGSVSSGVGSGSGVVVVAAGAAAVGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGEIRDGVSAVASDTKQGVPSKTHADNVVASNPPIGSDVYHLGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02541 378 SUPERFAMILY CCCH zinc finger 255 289 IPR036855 GO:0046872
Mepo1g02541 378 MobiDBLite consensus disorder prediction 43 73 - -
Mepo1g02541 378 FunFam zinc finger CCCH domain-containing protein 15-like 253 291 - -
Mepo1g02541 378 ProSiteProfiles Zinc finger C3H1-type profile. 170 198 IPR000571 GO:0046872
Mepo1g02541 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Mepo1g02541 378 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 284 IPR000571 GO:0046872
Mepo1g02541 378 FunFam Zinc finger CCCH domain-containing protein 90 125 - -
Mepo1g02541 378 Pfam CCCH-type zinc finger 174 196 IPR041367 -
Mepo1g02541 378 SUPERFAMILY CCCH zinc finger 167 198 IPR036855 GO:0046872
Mepo1g02541 378 FunFam Zinc finger, CCCH-type 163 202 - -
Mepo1g02541 378 Gene3D - 162 209 - -
Mepo1g02541 378 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Mepo1g02541 378 SMART c3hfinal6 94 120 IPR000571 GO:0046872
Mepo1g02541 378 SMART c3hfinal6 170 197 IPR000571 GO:0046872
Mepo1g02541 378 SUPERFAMILY CCCH zinc finger 92 125 IPR036855 GO:0046872
Mepo1g02541 378 Gene3D - 91 125 - -
Mepo1g02541 378 Gene3D - 253 290 - -
Mepo1g02541 378 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Mepo1g02541 378 PANTHER CCCH ZINC FINGER/TIS11-RELATED 254 290 IPR045877 GO:0003729
Mepo1g02541 378 ProSiteProfiles Zinc finger C3H1-type profile. 94 121 IPR000571 GO:0046872
Mepo1g02541 378 MobiDBLite consensus disorder prediction 33 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02541 Mepo-Chr1 26776777 26779842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02541 260 288 C3H Transcription Factor Family AT1G68200 62.069 3.40e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo1g02541 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02541 - - gmx:100788208 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02541 1 26776777 26779842 Mepo1g02541 1 26776777 26779842 ECH