Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02536 ATGTCGCGTCCCGATTATCCAACAACATGGATTCCTTATATAAACAGCAAAGACTGTTCTCAAGGATTTTGTAGTGTGTATTGTCCACAATGGTGCTACATAGTTTACACTCCTCCACCACCACCACCTTTTCAATACCCTGATGATGATTCAAAACCATATTTCTCTCCTCTTGTTATTGCAATTTTGGGAGTTTTAGCCACTGCTTTTTTACTACTAACTTATTACACTCTAATATCCAAATATTGTGGTCACAGAGAATCTTCAAGAAGAAACACCACTGACCCAGTTGATGAAATCCAACAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGTTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAGCTACAAAAAAGGAGATGCTTTCTTTAGTACTACTGTCACTGATTGTTCCGTTTGTCTAAGTGAGTTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAACCATGTTTTTCATCTTCCCTGTATTGATACATGGCTCAAATCTAACTCTAGTTGTCCTCTATGTCGTTCTAGCGTATTCACTTTGAATGCTTCAACAATTCATGTTCAAGTTCCGGCTACGGTTATAGAACTTCCTTCAAGAAATGAAACTTTTCAAGAAGAACAACAAATAGTTGTGGAAGAAGCAATGATGCATCATAGTAGAGCTGGGTCGAAGGCACCATCATTGCGCGCTTTTAGTGATTTATGTAATTTGCAAGGAAGAGAAAGAATAATTGAAATTAGAGATGAAGTTTGTGAATCCATTGGAAGGTCAGTGTCTATGGATCATTCATTTCAAAATGGTTTTTCAATTGGTGATGTGTTGAATATGAATGAAGATGAAGATGATTCTTGTGAAGAAGGATGTTCAATGGATGTTAGTTCATCAAAGATATCACAAGGAGAAAGTAGTAAATCAAGGTACAAAAGAAGAGTGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCTAATGGAAGATTTTCACTAGGTAAAATTGATAGAGGAAAAAGGCAGGGAATTATTTTGCCTGTTTGA 1074 0.3594 MSRPDYPTTWIPYINSKDCSQGFCSVYCPQWCYIVYTPPPPPPFQYPDDDSKPYFSPLVIAILGVLATAFLLLTYYTLISKYCGHRESSRRNTTDPVDEIQQNRRENCQVSTFGLDDAQIKSIAVFSYKKGDAFFSTTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRSSVFTLNASTIHVQVPATVIELPSRNETFQEEQQIVVEEAMMHHSRAGSKAPSLRAFSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNGFSIGDVLNMNEDEDDSCEEGCSMDVSSSKISQGESSKSRYKRRVLHCVMSPIAMKRSFSNGRFSLGKIDRGKRQGIILPV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02536 357 PANTHER RING-H2 FINGER PROTEIN ATL16 42 320 IPR044600 GO:0016567|GO:0016740
Mepo1g02536 357 SMART ring_2 142 183 IPR001841 -
Mepo1g02536 357 MobiDBLite consensus disorder prediction 294 314 - -
Mepo1g02536 357 Pfam Ring finger domain 141 184 IPR001841 -
Mepo1g02536 357 SUPERFAMILY RING/U-box 141 190 - -
Mepo1g02536 357 FunFam E3 ubiquitin-protein ligase ATL6 102 189 - -
Mepo1g02536 357 CDD RING-H2_EL5-like 141 184 - -
Mepo1g02536 357 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Mepo1g02536 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02536 Mepo-Chr1 26743717 26745565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02536 7 349 C3H Transcription Factor Family AT5G17600 37.398 8.58e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02536 - - vun:114176645 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02536 1 26743717 26745565 Mepo1g02536 1 26743717 26745565 ECH
Mepo5g01382 5 14324368 14325668 Mepo1g02536 1 26743717 26745565 PCT