Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02520 ATGGCTTCTGATGGTTTCACCGATAAGAACCTCGTCTTCAGAAAACTCAAGTTGAAGTCTGAAAATAAGATGTGTTTTGATTGCAATACAAAGAACCCAACATGGGCGTCAGTAACATATGGGATCTTCCTTTGCATTGATTGTTCTGCCGTTCATCGAAGTCTCGGTGTTCATATTAGTTTTGTGAGATCTACAAACTTAGACTCGTGGACTCCTGAGCAACTAAAAATAATGAGTTTTGGAGGAAACAGTCGTGCACAAATTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCAAAGTATACATCCAGAGCTGCAGAGTTGTATAGGCAAATTCTTGCGAAGGAAGTAGCTAAAAGTATGGCTGAAGAGAAGGGCTTGCCTTCATCACCTGTTGCTTCTAAGAGTTCTAATGGACTTCCTGATGTCATGACGAATGAGGTACTGAAAGAAAACACATTAGAGAAGGCAGAAAAGCTTGAGAGTACATCTTCACCTAGAGCTTCACATACAATAGTATCAAATAATTTGAAGAAGTCTATTGGTGGTAAAAAGCCTGGGAAGAGTGGGGGACTTGGTGCCCGTAAGCTCAATAAGAAGCCAAGTGAGTCTCTTTATGAGCAGAAGCCTGAAGAACCACCTGCTCTAGTTCCATCCACGACAAACAACAATGTGTCTGCCAGGACATCTATGGCTTCTCGTTTTGAATATGTGGATAATGTTCAGTCATCTGAGTTGGATTCTCGAGGTTCAAATACATTCAATCACGTTTCTATACCGAAGTCATCAAACTTTTTTGCAGACTTTGGAATGGATAATGGTTTCCCGAAGAAATTTGGGTCAAATACCTCAAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAGATGCTAAATCTATTTCGTCATCTCAATTTTTCGGAGACCATAACAAAGCAAGAGATGCTGAGACTCGAGCTACTTTGTCAAAATTTTCAAGTTCGTCTGCCATCTCCAGTGCTGATTTTTTTGGTGACTCCGGAGATTCCTCTATTGATCTTGCTGCTAGCGATCTCATCAATCGATTATCTTTTCAGGCACAACAAGATATATCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAAAAACTCAGCTCCTTAGCCTCCTCCTTGATGACAGATCTTCAGGACCGAATTCTCTAA 1206 0.4071 MASDGFTDKNLVFRKLKLKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKIMSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQILAKEVAKSMAEEKGLPSSPVASKSSNGLPDVMTNEVLKENTLEKAEKLESTSSPRASHTIVSNNLKKSIGGKKPGKSGGLGARKLNKKPSESLYEQKPEEPPALVPSTTNNNVSARTSMASRFEYVDNVQSSELDSRGSNTFNHVSIPKSSNFFADFGMDNGFPKKFGSNTSKVQIEESDEARKKFSDAKSISSSQFFGDHNKARDAETRATLSKFSSSSAISSADFFGDSGDSSIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02520 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Mepo1g02520 401 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Mepo1g02520 401 MobiDBLite consensus disorder prediction 168 182 - -
Mepo1g02520 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Mepo1g02520 401 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Mepo1g02520 401 Gene3D Arf GTPase activating protein 3 139 IPR038508 -
Mepo1g02520 401 MobiDBLite consensus disorder prediction 153 167 - -
Mepo1g02520 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 401 - -
Mepo1g02520 401 Pfam Putative GTPase activating protein for Arf 13 108 IPR001164 GO:0005096
Mepo1g02520 401 MobiDBLite consensus disorder prediction 127 227 - -
Mepo1g02520 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Mepo1g02520 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Mepo1g02520 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Mepo1g02520 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02520 Mepo-Chr1 26479614 26483370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02520 13 84 C2H2 Transcription Factor Family AT3G07940 49.315 5.56e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02520 K12493 K11855 gmx:100785169 612.838